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1DLV
Asym. Unit
Info
Asym.Unit (254 KB)
Biol.Unit 1 (247 KB)
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(1)
Title
:
BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH COA
Authors
:
Y. Modis, R. K. Wierenga
Date
:
12 Dec 99 (Deposition) - 24 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Biosynthetic Thiolase, Coa, Tetramer, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Modis, R. K. Wierenga
Crystallographic Analysis Of The Reaction Pathway Of Zoogloea Ramigera Biosynthetic Thiolase.
J. Mol. Biol. V. 297 1171 2000
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: COENZYME A (COAa)
1b: COENZYME A (COAb)
1c: COENZYME A (COAc)
1d: COENZYME A (COAd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
COA
4
Ligand/Ion
COENZYME A
2
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:5175 , HOH B:5221
BINDING SITE FOR RESIDUE SO4 B 5001
02
AC2
SOFTWARE
SER A:260 , ALA A:262 , GLU A:263 , ARG A:266 , HOH A:5180
BINDING SITE FOR RESIDUE SO4 A 5002
03
AC3
SOFTWARE
SER B:260 , GLU B:263 , ARG B:266 , HOH B:5184
BINDING SITE FOR RESIDUE SO4 B 5003
04
AC4
SOFTWARE
ARG A:302 , HOH A:5156 , HOH A:5282
BINDING SITE FOR RESIDUE SO4 A 5004
05
AC5
SOFTWARE
ARG A:41 , ILE A:199 , VAL A:200 , PRO A:201 , HOH A:5159 , HOH A:5256 , HOH A:5291
BINDING SITE FOR RESIDUE SO4 A 5005
06
AC6
SOFTWARE
ARG B:41 , ILE B:199 , VAL B:200 , PRO B:201 , HOH B:5176 , HOH B:5242 , HOH B:5245
BINDING SITE FOR RESIDUE SO4 B 5006
07
AC7
SOFTWARE
LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , LEU A:231 , ALA A:243 , GLY A:244 , SER A:247 , MET A:288 , PHE A:319 , HOH A:5092 , HOH A:5098 , HOH A:5126 , HOH A:5167 , HOH A:5170 , MET D:134
BINDING SITE FOR RESIDUE COA A 1001
08
AC8
SOFTWARE
LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , PHE B:235 , ALA B:243 , GLY B:244 , SER B:247 , MET B:288 , PHE B:319 , HOH B:5023 , HOH B:5051 , HOH B:5056 , HOH B:5090 , HOH B:5214
BINDING SITE FOR RESIDUE COA B 2001
09
AC9
SOFTWARE
LEU C:148 , HIS C:156 , MET C:157 , ARG C:220 , SER C:227 , MET C:228 , PHE C:235 , ALA C:243 , GLY C:244 , SER C:247 , MET C:288 , PHE C:319 , HIS C:348
BINDING SITE FOR RESIDUE COA C 3001
10
BC1
SOFTWARE
LEU D:148 , HIS D:156 , MET D:157 , ARG D:220 , SER D:227 , MET D:228 , LEU D:231 , ALA D:243 , GLY D:244 , SER D:247 , MET D:288 , PHE D:319 , HIS D:348 , HOH D:4039
BINDING SITE FOR RESIDUE COA D 4001
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1dlva1 (A:4-268)
1b: SCOP_d1dlva2 (A:269-392)
1c: SCOP_d1dlvb1 (B:4-268)
1d: SCOP_d1dlvb2 (B:269-392)
1e: SCOP_d1dlvc1 (C:4-268)
1f: SCOP_d1dlvc2 (C:269-392)
1g: SCOP_d1dlvd1 (D:4-268)
1h: SCOP_d1dlvd2 (D:269-392)
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)
(
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(
)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Biosynthetic thiolase
(16)
Zoogloea ramigera [TaxId: 350]
(16)
1a
d1dlva1
A:4-268
1b
d1dlva2
A:269-392
1c
d1dlvb1
B:4-268
1d
d1dlvb2
B:269-392
1e
d1dlvc1
C:4-268
1f
d1dlvc2
C:269-392
1g
d1dlvd1
D:4-268
1h
d1dlvd2
D:269-392
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1dlvA01 (A:4-124,A:194-275)
1b: CATH_1dlvB02 (B:151-193,B:276-389)
1c: CATH_1dlvA02 (A:152-193,A:276-389)
1d: CATH_1dlvC02 (C:152-193,C:276-389)
1e: CATH_1dlvD02 (D:152-193,D:276-389)
1f: CATH_1dlvB01 (B:4-124,B:194-275)
1g: CATH_1dlvC01 (C:4-124,C:194-275)
1h: CATH_1dlvD01 (D:4-124,D:194-275)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(3)
1a
1dlvA01
A:4-124,A:194-275
1b
1dlvB02
B:151-193,B:276-389
1c
1dlvA02
A:152-193,A:276-389
1d
1dlvC02
C:152-193,C:276-389
1e
1dlvD02
D:152-193,D:276-389
1f
1dlvB01
B:4-124,B:194-275
1g
1dlvC01
C:4-124,C:194-275
1h
1dlvD01
D:4-124,D:194-275
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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