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1DLU
Asym. Unit
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Asym.Unit (250 KB)
Biol.Unit 1 (244 KB)
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(1)
Title
:
UNLIGANDED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA
Authors
:
Y. Modis, R. K. Wierenga
Date
:
12 Dec 99 (Deposition) - 24 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Thiolase Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Modis, R. K. Wierenga
Crystallographic Analysis Of The Reaction Pathway Of Zoogloea Ramigera Biosynthetic Thiolase.
J. Mol. Biol. V. 297 1171 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
1c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
1d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MPD
4
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:2176 , HOH B:2221
BINDING SITE FOR RESIDUE SO4 B 2001
02
AC2
SOFTWARE
SER A:260 , ALA A:262 , ARG A:266 , HOH A:2179
BINDING SITE FOR RESIDUE SO4 A 2002
03
AC3
SOFTWARE
SER B:260 , ARG B:266 , HOH B:2183 , HOH B:2212
BINDING SITE FOR RESIDUE SO4 B 2003
04
AC4
SOFTWARE
ARG A:302 , HOH A:2155
BINDING SITE FOR RESIDUE SO4 A 2004
05
AC5
SOFTWARE
ARG A:41 , ILE A:199 , VAL A:200 , PRO A:201 , HOH A:2158 , HOH A:2253
BINDING SITE FOR RESIDUE SO4 A 2005
06
AC6
SOFTWARE
ARG B:41 , ILE B:199 , VAL B:200 , PRO B:201 , HOH B:2177 , HOH B:2243 , HOH B:2245
BINDING SITE FOR RESIDUE SO4 B 2006
07
AC7
SOFTWARE
LEU A:148 , HIS A:156 , PHE A:235 , SER A:247 , GLY A:248 , LEU A:249 , ALA A:318 , PHE A:319 , HIS A:348 , HOH A:2068 , HOH A:2295
BINDING SITE FOR RESIDUE MPD A 1001
08
AC8
SOFTWARE
LEU B:148 , HIS B:156 , ALA B:246 , SER B:247 , GLY B:248 , LEU B:249 , ALA B:318 , HIS B:348 , HOH B:2075 , HOH B:2291
BINDING SITE FOR RESIDUE MPD B 1002
09
AC9
SOFTWARE
LEU C:148 , HIS C:156 , ALA C:246 , SER C:247 , GLY C:248 , LEU C:249 , ALA C:318 , PHE C:319 , HIS C:348 , HOH C:1103
BINDING SITE FOR RESIDUE MPD C 1003
10
BC1
SOFTWARE
LEU D:148 , HIS D:156 , ALA D:246 , SER D:247 , LEU D:249 , ALA D:318 , HIS D:348 , HOH D:1042 , HOH D:1073
BINDING SITE FOR RESIDUE MPD D 1004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1dlua1 (A:4-268)
1b: SCOP_d1dlua2 (A:269-392)
1c: SCOP_d1dlub1 (B:4-268)
1d: SCOP_d1dlub2 (B:269-392)
1e: SCOP_d1dluc1 (C:4-268)
1f: SCOP_d1dluc2 (C:269-392)
1g: SCOP_d1dlud1 (D:4-268)
1h: SCOP_d1dlud2 (D:269-392)
View:
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Classes
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Biosynthetic thiolase
(16)
Zoogloea ramigera [TaxId: 350]
(16)
1a
d1dlua1
A:4-268
1b
d1dlua2
A:269-392
1c
d1dlub1
B:4-268
1d
d1dlub2
B:269-392
1e
d1dluc1
C:4-268
1f
d1dluc2
C:269-392
1g
d1dlud1
D:4-268
1h
d1dlud2
D:269-392
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1dluA01 (A:4-124,A:194-275)
1b: CATH_1dluB01 (B:4-124,B:194-275)
1c: CATH_1dluA02 (A:152-193,A:276-389)
1d: CATH_1dluB02 (B:152-193,B:276-389)
1e: CATH_1dluC02 (C:152-193,C:276-389)
1f: CATH_1dluD02 (D:152-193,D:276-389)
1g: CATH_1dluC01 (C:4-124,C:194-275)
1h: CATH_1dluD01 (D:4-124,D:194-275)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(3)
1a
1dluA01
A:4-124,A:194-275
1b
1dluB01
B:4-124,B:194-275
1c
1dluA02
A:152-193,A:276-389
1d
1dluB02
B:152-193,B:276-389
1e
1dluC02
C:152-193,C:276-389
1f
1dluD02
D:152-193,D:276-389
1g
1dluC01
C:4-124,C:194-275
1h
1dluD01
D:4-124,D:194-275
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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