PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1DLP
Asym. Unit
Info
Asym.Unit (227 KB)
Biol.Unit 1 (212 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURAL CHARACTERIZATION OF THE NATIVE FETUIN-BINDING PROTEIN SCILLA CAMPANULATA AGGLUTININ (SCAFET): A NOVEL TWO-DOMAIN LECTIN
Authors
:
L. M. Wright, C. D. Reynolds, P. J. Rizkallah, A. K. Allen, E. J. M. Vandamme, M. J. Donovan, W. J. Peumans
Date
:
11 Dec 99 (Deposition) - 10 Feb 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Two-Domain Lectin, Beta Prism Ii Fold, Native, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Wright, C. D. Reynolds, P. J. Rizkallah, A. K. Allen, E. J. Van Damme, M. J. Donovan, W. J. Peumans
Structural Characterisation Of The Native Fetuin-Binding Protein Scilla Campanulata Agglutinin: A Novel Two-Domain Lectin.
Febs Lett. V. 468 19 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1dlpa1 (A:1-115)
1b: SCOP_d1dlpa2 (A:116-235)
1c: SCOP_d1dlpf1 (F:1-111)
1d: SCOP_d1dlpf2 (F:124-235)
1e: SCOP_d1dlpb1 (B:1-113)
1f: SCOP_d1dlpb2 (B:123-235)
1g: SCOP_d1dlpc1 (C:1-115)
1h: SCOP_d1dlpc2 (C:116-236)
1i: SCOP_d1dlpd1 (D:1-114)
1j: SCOP_d1dlpd2 (D:123-235)
1k: SCOP_d1dlpe1 (E:1-115)
1l: SCOP_d1dlpe2 (E:116-235)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism II
(19)
Superfamily
:
alpha-D-mannose-specific plant lectins
(19)
Family
:
alpha-D-mannose-specific plant lectins
(12)
Protein domain
:
Fetuin-binding protein Scafet precursor
(1)
Bluebell (Scilla campanulata) [TaxId: 81759]
(1)
1a
d1dlpa1
A:1-115
1b
d1dlpa2
A:116-235
1c
d1dlpf1
F:1-111
1d
d1dlpf2
F:124-235
1e
d1dlpb1
B:1-113
1f
d1dlpb2
B:123-235
1g
d1dlpc1
C:1-115
1h
d1dlpc2
C:116-236
1i
d1dlpd1
D:1-114
1j
d1dlpd2
D:123-235
1k
d1dlpe1
E:1-115
1l
d1dlpe2
E:116-235
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1dlpB02 (B:105-229)
1b: CATH_1dlpB01 (B:1-104,B:230-235)
1c: CATH_1dlpD01 (D:1-104,D:230-235)
1d: CATH_1dlpE01 (E:1-104,E:230-235)
1e: CATH_1dlpF01 (F:1-104,F:230-235)
1f: CATH_1dlpD02 (D:105-229)
1g: CATH_1dlpF02 (F:105-229)
1h: CATH_1dlpE02 (E:105-229)
1i: CATH_1dlpA02 (A:105-229)
1j: CATH_1dlpC02 (C:105-229)
1k: CATH_1dlpC01 (C:1-104,C:230-236)
1l: CATH_1dlpA01 (A:1-104,A:230-235)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Orthogonal Prism
(16)
Topology
:
Agglutinin, subunit A
(16)
Homologous Superfamily
:
Agglutinin, subunit A
(16)
Hyacinthoides hispanica. Organism_taxid: 81759.
(2)
1a
1dlpB02
B:105-229
1b
1dlpB01
B:1-104,B:230-235
1c
1dlpD01
D:1-104,D:230-235
1d
1dlpE01
E:1-104,E:230-235
1e
1dlpF01
F:1-104,F:230-235
1f
1dlpD02
D:105-229
1g
1dlpF02
F:105-229
1h
1dlpE02
E:105-229
1i
1dlpA02
A:105-229
1j
1dlpC02
C:105-229
1k
1dlpC01
C:1-104,C:230-236
1l
1dlpA01
A:1-104,A:230-235
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (227 KB)
Header - Asym.Unit
Biol.Unit 1 (212 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1DLP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help