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1DJS
Biol. Unit 2
Info
Asym.Unit (68 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (246 KB)
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(1)
Title
:
LIGAND-BINDING PORTION OF FIBROBLAST GROWTH FACTOR RECEPTOR 2 IN COMPLEX WITH FGF1
Authors
:
D. J. Stauber, A. D. Digabriele, W. A. Hendrickson
Date
:
03 Dec 99 (Deposition) - 12 Jan 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (4x)
Keywords
:
Fgfr, Fgf, Immunoglobulin, Immune System, Hormone-Growth Factor- Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Stauber, A. D. Digabriele, W. A. Hendrickson
Structural Interactions Of Fibroblast Growth Factor Recepto With Its Ligands.
Proc. Natl. Acad. Sci. Usa V. 97 49 2000
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Hetero Components
(2, 56)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
20
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
36
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN B:18 , LYS B:112 , LYS B:113 , LYS B:118 , HOH B:447
BINDING SITE FOR RESIDUE SO4 B 401
2
AC2
SOFTWARE
LYS B:112 , LYS B:118 , ARG B:122 , HOH B:505
BINDING SITE FOR RESIDUE SO4 B 402
3
AC3
SOFTWARE
PRO A:223 , GLU A:339 , SER A:354 , ALA A:355 , TRP A:356 , HOH A:448
BINDING SITE FOR RESIDUE SO4 A 403
4
AC4
SOFTWARE
HIS A:254 , ARG A:255 , ILE A:348 , HOH A:583
BINDING SITE FOR RESIDUE SO4 A 404
5
AC5
SOFTWARE
VAL B:137 , SER B:138 , HOH B:490 , HOH B:501 , HOH B:539
BINDING SITE FOR RESIDUE SO4 B 405
6
AC6
SOFTWARE
LYS A:176 , ARG A:210 , HIS A:213 , ILE A:217
BINDING SITE FOR RESIDUE SO4 A 406
7
AC7
SOFTWARE
ARG A:178 , LYS A:208 , HOH A:565
BINDING SITE FOR RESIDUE SO4 A 407
8
AC8
SOFTWARE
GLU A:219 , SER A:220 , HOH A:427 , SER B:17 , ASN B:92 , LYS B:128 , LEU B:131 , HOH B:476
BINDING SITE FOR RESIDUE SO4 B 408
9
AC9
SOFTWARE
GLY B:6 , LYS B:12 , PRO B:134 , LEU B:135 , PRO B:136
BINDING SITE FOR RESIDUE SO4 B 409
[
close Site info
]
SAPs(SNPs)/Variants
(47, 188)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_021357 (G6E, chain B, )
02: VAR_017259 (A172F, chain A, )
03: VAR_017260 (M186T, chain A, )
04: VAR_036380 (R203C, chain A, )
05: VAR_004114 (S252F, chain A, )
06: VAR_004113 (S252L, chain A, )
07: VAR_004115 (S252W, chain A, )
08: VAR_004117 (P253R, chain A, )
09: VAR_017261 (P263L, chain A, )
10: VAR_004118 (S267P, chain A, )
11: VAR_042205 (G272V, chain A, )
12: VAR_004120 (F276V, chain A, )
13: VAR_004121 (C278F, chain A, )
14: VAR_017263 (C278Y, chain A, )
15: VAR_017264 (Y281C, chain A, )
16: VAR_042206 (D283N, chain A, )
17: VAR_017265 (I288S, chain A, )
18: VAR_004123 (Q289P, chain A, )
19: VAR_004124 (W290C, chain A, )
20: VAR_017266 (W290G, chain A, )
21: VAR_004125 (W290R, chain A, )
22: VAR_004126 (K292E, chain A, )
23: VAR_004128 (A314S, chain A, )
24: VAR_017267 (A315S, chain A, )
25: VAR_004129 (D321A, chain A, )
26: VAR_004130 (Y328C, chain A, )
27: VAR_004131 (N331I, chain A, )
28: VAR_017268 (A337P, chain A, )
29: VAR_004133 (G338E, chain A, )
30: VAR_015011 (G338R, chain A, )
31: VAR_017269 (Y340C, chain A, )
32: VAR_004134 (Y340H, chain A, )
33: VAR_004135 (T341P, chain A, )
34: VAR_004136 (C342F, chain A, )
35: VAR_017270 (C342G, chain A, )
36: VAR_004137 (C342R, chain A, )
37: VAR_004138 (C342S, chain A, )
38: VAR_017271 (C342W, chain A, )
39: VAR_004139 (C342Y, chain A, )
40: VAR_004140 (A344G, chain A, )
41: VAR_004141 (A344P, chain A, )
42: VAR_004142 (S347C, chain A, )
43: VAR_004143 (S351C, chain A, )
44: VAR_004144 (S354C, chain A, )
45: VAR_017272 (S354Y, chain A, )
46: VAR_004146 (V359F, chain A, )
47: VAR_017273 (A362S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_021357
G
21
E
FGF1_HUMAN
Polymorphism
17223632
B
G
6
E
02
UniProt
VAR_017259
A
172
F
FGFR2_HUMAN
Disease (PS)
---
A
A
172
F
03
UniProt
VAR_017260
M
186
T
FGFR2_HUMAN
Polymorphism
755793
A
M
186
T
04
UniProt
VAR_036380
R
203
C
FGFR2_HUMAN
Unclassified
---
A
R
203
C
05
UniProt
VAR_004114
S
252
F
FGFR2_HUMAN
Disease (APRS)
---
A
S
252
F
06
UniProt
VAR_004113
S
252
L
FGFR2_HUMAN
Disease (CS)
---
A
S
252
L
07
UniProt
VAR_004115
S
252
W
FGFR2_HUMAN
Disease (PS)
---
A
S
252
W
08
UniProt
VAR_004117
P
253
R
FGFR2_HUMAN
Disease (APRS)
---
A
P
253
R
09
UniProt
VAR_017261
P
263
L
FGFR2_HUMAN
Disease (CS)
---
A
P
263
L
10
UniProt
VAR_004118
S
267
P
FGFR2_HUMAN
Disease (CS)
---
A
S
267
P
11
UniProt
VAR_042205
G
272
V
FGFR2_HUMAN
Unclassified
---
A
G
272
V
12
UniProt
VAR_004120
F
276
V
FGFR2_HUMAN
Disease (CS)
---
A
F
276
V
13
UniProt
VAR_004121
C
278
F
FGFR2_HUMAN
Disease (PS)
---
A
C
278
F
14
UniProt
VAR_017263
C
278
Y
FGFR2_HUMAN
Disease (CS)
---
A
C
278
Y
15
UniProt
VAR_017264
Y
281
C
FGFR2_HUMAN
Disease (CS)
---
A
Y
281
C
16
UniProt
VAR_042206
D
283
N
FGFR2_HUMAN
Unclassified
---
A
D
283
N
17
UniProt
VAR_017265
I
288
S
FGFR2_HUMAN
Disease (CS)
---
A
I
288
S
18
UniProt
VAR_004123
Q
289
P
FGFR2_HUMAN
Disease (JWS)
---
A
Q
289
P
19
UniProt
VAR_004124
W
290
C
FGFR2_HUMAN
Disease (PS)
---
A
W
290
C
20
UniProt
VAR_017266
W
290
G
FGFR2_HUMAN
Disease (CS)
---
A
W
290
G
21
UniProt
VAR_004125
W
290
R
FGFR2_HUMAN
Disease (CS)
---
A
W
290
R
22
UniProt
VAR_004126
K
292
E
FGFR2_HUMAN
Disease (CS)
---
A
K
292
E
23
UniProt
VAR_004128
A
314
S
FGFR2_HUMAN
Unclassified
---
A
A
314
S
24
UniProt
VAR_017267
A
315
S
FGFR2_HUMAN
Unclassified
---
A
A
315
S
25
UniProt
VAR_004129
D
321
A
FGFR2_HUMAN
Disease (PS)
---
A
D
321
A
26
UniProt
VAR_004130
Y
328
C
FGFR2_HUMAN
Disease (CS)
---
A
Y
328
C
27
UniProt
VAR_004131
N
331
I
FGFR2_HUMAN
Disease (CS)
---
A
N
331
I
28
UniProt
VAR_017268
A
337
P
FGFR2_HUMAN
Disease (CS)
---
A
A
337
P
29
UniProt
VAR_004133
G
338
E
FGFR2_HUMAN
Disease (CS)
---
A
G
338
E
30
UniProt
VAR_015011
G
338
R
FGFR2_HUMAN
Disease (CS)
---
A
G
338
R
31
UniProt
VAR_017269
Y
340
C
FGFR2_HUMAN
Disease (PS)
---
A
Y
340
C
32
UniProt
VAR_004134
Y
340
H
FGFR2_HUMAN
Disease (CS)
---
A
Y
340
H
33
UniProt
VAR_004135
T
341
P
FGFR2_HUMAN
Disease (PS)
---
A
T
341
P
34
UniProt
VAR_004136
C
342
F
FGFR2_HUMAN
Disease (CS)
---
A
C
342
F
35
UniProt
VAR_017270
C
342
G
FGFR2_HUMAN
Disease (PS)
---
A
C
342
G
36
UniProt
VAR_004137
C
342
R
FGFR2_HUMAN
Disease (PS)
---
A
C
342
R
37
UniProt
VAR_004138
C
342
S
FGFR2_HUMAN
Disease (PS)
---
A
C
342
S
38
UniProt
VAR_017271
C
342
W
FGFR2_HUMAN
Disease (CS)
---
A
C
342
W
39
UniProt
VAR_004139
C
342
Y
FGFR2_HUMAN
Disease (PS)
---
A
C
342
Y
40
UniProt
VAR_004140
A
344
G
FGFR2_HUMAN
Disease (JWS)
---
A
A
344
G
41
UniProt
VAR_004141
A
344
P
FGFR2_HUMAN
Disease (PS)
---
A
A
344
P
42
UniProt
VAR_004142
S
347
C
FGFR2_HUMAN
Disease (CS)
---
A
S
347
C
43
UniProt
VAR_004143
S
351
C
FGFR2_HUMAN
Disease (PS)
---
A
S
351
C
44
UniProt
VAR_004144
S
354
C
FGFR2_HUMAN
Disease (CS)
---
A
S
354
C
45
UniProt
VAR_017272
S
354
Y
FGFR2_HUMAN
Disease (CS)
---
A
S
354
Y
46
UniProt
VAR_004146
V
359
F
FGFR2_HUMAN
Disease (PS)
---
A
V
359
F
47
UniProt
VAR_017273
A
362
S
FGFR2_HUMAN
Disease (CS)
---
A
A
362
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (B:71-94)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
4
B:71-94
[
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1djsb_ (B:)
2a: SCOP_d1djsa1 (A:147-250)
2b: SCOP_d1djsa2 (A:251-362)
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Classes
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)
(
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Folds
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Protein Domains
(
)
(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
1a
d1djsb_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Fibroblast growth factor receptor, FGFR
(15)
Human (Homo sapiens), FGFR2a [TaxId: 9606]
(10)
2a
d1djsa1
A:147-250
2b
d1djsa2
A:251-362
[
close SCOP info
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1djsA01 (A:147-250)
1b: CATH_1djsA02 (A:251-362)
2a: CATH_1djsB00 (B:6-140)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1djsA01
A:147-250
1b
1djsA02
A:251-362
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
2a
1djsB00
B:6-140
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (68 KB)
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