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1DHS
Asym. Unit
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Asym.Unit (66 KB)
Biol.Unit 1 (238 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NAD COMPLEX OF HUMAN DEOXYHYPUSINE SYNTHASE
Authors
:
D. -I. Liao, D. R. Davies
Date
:
28 Oct 97 (Deposition) - 25 Feb 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Spermidine, Initiation Factor 5A, Nad, Subunit Interactions, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. I. Liao, E. C. Wolff, M. H. Park, D. R. Davies
Crystal Structure Of The Nad Complex Of Human Deoxyhypusine Synthase: An Enzyme With A Ball-And-Chain Mechanism For Blocking The Active Site.
Structure V. 6 23 1998
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
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Label:
No.
Name
Count
Type
Full Name
1
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:104 , SER A:105 , ASN A:106 , LEU A:107 , SER A:109 , THR A:131 , ALA A:132 , GLY A:133 , GLU A:137 , ILE A:166 , ASP A:238 , GLY A:282 , GLY A:283 , GLY A:284 , VAL A:285 , HIS A:288 , ASN A:307 , THR A:308 , ALA A:309 , ASP A:313 , SER A:315 , ASP A:316 , SER A:317 , ALA A:341 , ASP A:342 , ALA A:343 , HOH A:413 , HOH A:530 , HOH A:553 , HOH A:645
BINDING SITE FOR RESIDUE NAD A 700
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_043005 (E174D, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_043005
E
174
D
DHYS_HUMAN
Polymorphism
10425108
A
E
174
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(9, 9)
Info
All Exons
Exon 1.1 (A:9-69)
Exon 1.2c (A:70-124 (gaps))
Exon 1.3 (A:125-165)
Exon 1.4 (A:165-197)
Exon 1.5 (A:198-226)
Exon 1.7 (A:227-262)
Exon 1.8 (A:262-296)
Exon 1.9a (A:297-338)
Exon 1.10 (A:339-369)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2c
03: Boundary 1.2c/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9a
09: Boundary 1.9a/1.10
10: Boundary 1.10/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000210060
1
ENSE00000836318
chr19:
12792682-12792374
309
DHYS_HUMAN
1-69
69
1
A:9-69
61
1.2c
ENST00000210060
2c
ENSE00000836317
chr19:
12791139-12790975
165
DHYS_HUMAN
70-124
55
1
A:70-124 (gaps)
55
1.3
ENST00000210060
3
ENSE00001625611
chr19:
12790736-12790615
122
DHYS_HUMAN
125-165
41
1
A:125-165
41
1.4
ENST00000210060
4
ENSE00001676585
chr19:
12790533-12790437
97
DHYS_HUMAN
165-197
33
1
A:165-197
33
1.5
ENST00000210060
5
ENSE00001750488
chr19:
12790357-12790271
87
DHYS_HUMAN
198-226
29
1
A:198-226
29
1.7
ENST00000210060
7
ENSE00001723881
chr19:
12788210-12788105
106
DHYS_HUMAN
227-262
36
1
A:227-262
36
1.8
ENST00000210060
8
ENSE00001720398
chr19:
12788025-12787922
104
DHYS_HUMAN
262-296
35
1
A:262-296
35
1.9a
ENST00000210060
9a
ENSE00001698134
chr19:
12786956-12786831
126
DHYS_HUMAN
297-338
42
1
A:297-338
42
1.10
ENST00000210060
10
ENSE00001736077
chr19:
12786747-12786537
211
DHYS_HUMAN
339-369
31
1
A:339-369
31
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1dhsa_ (A:)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Deoxyhypusine synthase, DHS
(4)
Protein domain
:
Deoxyhypusine synthase, DHS
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1dhsa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1dhsA00 (A:9-369)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Deoxyhypusine Synthase
(4)
Homologous Superfamily
:
Deoxyhypusine Synthase
(4)
Human (Homo sapiens)
(4)
1a
1dhsA00
A:9-369
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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