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1DHR
Asym. Unit
Info
Asym.Unit (44 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAT LIVER DIHYDROPTERIDINE REDUCTASE
Authors
:
K. I. Varughese, M. M. Skinner, J. M. Whiteley, D. A. Matthews, N. H. Xuon
Date
:
30 Mar 92 (Deposition) - 15 Jul 93 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase(Acting On Nadh Or Nadph)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. I. Varughese, M. M. Skinner, J. M. Whiteley, D. A. Matthews, N. H. Xuong
Crystal Structure Of Rat Liver Dihydropteridine Reductase.
Proc. Natl. Acad. Sci. Usa V. 89 6080 1992
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
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Label:
No.
Name
Count
Type
Full Name
1
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:12 , ARG A:15 , GLY A:16 , ALA A:17 , LEU A:18 , ASP A:37 , VAL A:38 , VAL A:50 , GLN A:59 , LYS A:69 , VAL A:82 , ALA A:83 , GLY A:84 , GLY A:85 , LYS A:105 , GLN A:106 , THR A:110 , ALA A:131 , TYR A:146 , LYS A:150 , VAL A:179 , THR A:180 , LEU A:181 , ASN A:186 , HOH A:245 , HOH A:248 , HOH A:254 , HOH A:275 , HOH A:279 , HOH A:300 , HOH A:308
BINDING SITE FOR RESIDUE NAD A 241
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:133-161)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHPR_RAT
134-162
1
A:133-161
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Exons
(7, 7)
Info
All Exons
Exon 1.1 (A:5-31)
Exon 1.2 (A:32-62)
Exon 1.3 (A:63-95)
Exon 1.4 (A:95-142)
Exon 1.5 (A:142-178)
Exon 1.6 (A:178-206)
Exon 1.7 (A:206-240)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000004385
1
ENSRNOE00000030853
chr14:
70741985-70742143
159
DHPR_RAT
1-32
32
1
A:5-31
27
1.2
ENSRNOT00000004385
2
ENSRNOE00000030907
chr14:
70744499-70744591
93
DHPR_RAT
33-63
31
1
A:32-62
31
1.3
ENSRNOT00000004385
3
ENSRNOE00000030939
chr14:
70746515-70746611
97
DHPR_RAT
64-96
33
1
A:63-95
33
1.4
ENSRNOT00000004385
4
ENSRNOE00000030977
chr14:
70747481-70747621
141
DHPR_RAT
96-143
48
1
A:95-142
48
1.5
ENSRNOT00000004385
5
ENSRNOE00000031006
chr14:
70750300-70750408
109
DHPR_RAT
143-179
37
1
A:142-178
37
1.6
ENSRNOT00000004385
6
ENSRNOE00000031035
chr14:
70751781-70751864
84
DHPR_RAT
179-207
29
1
A:178-206
29
1.7
ENSRNOT00000004385
7
ENSRNOE00000031064
chr14:
70754973-70755600
628
DHPR_RAT
207-241
35
1
A:206-240
35
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1dhra_ (A:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Dihydropteridin reductase (pteridine reductase)
(24)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d1dhra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1dhrA00 (A:5-240)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Norway rat (Rattus norvegicus)
(18)
1a
1dhrA00
A:5-240
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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