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1DGU
Asym. Unit
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Asym.Unit (54 KB)
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(1)
Title
:
HOMOLOGY-BASED MODEL OF CALCIUM-SATURATED CIB (CALCIUM-AND INTEGRIN-BINDING PROTEIN)
Authors
:
P. M. Hwang, H. J. Vogel
Date
:
25 Nov 99 (Deposition) - 08 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Helical, Ef-Hands, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. M. Hwang, H. J. Vogel
Structures Of The Platelet Calcium- And Integrin-Binding Protein And The Alphaiib-Integrin Cytoplasmic Domain Suggest A Mechanism For Calcium-Regulated Recognition; Homology Modelling And Nmr Studies.
J. Mol. Recog. V. 13 83 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019565 (S36T, chain A, )
2: VAR_048636 (I98T, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019565
S
44
T
CIB1_HUMAN
Polymorphism
3210935
A
S
36
T
2
UniProt
VAR_048636
I
106
T
CIB1_HUMAN
Polymorphism
11551250
A
I
98
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:95-130|A:140-175)
2: EF_HAND_1 (A:108-120|A:153-165)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CIB1_HUMAN
103-138
148-183
2
A:95-130
A:140-175
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CIB1_HUMAN
116-128
161-173
2
A:108-120
A:153-165
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Exons
(7, 7)
Info
All Exons
Exon 1.1 (A:1-9)
Exon 1.2 (A:10-21)
Exon 1.3 (A:21-57)
Exon 1.4 (A:58-108)
Exon 1.5 (A:108-147)
Exon 1.6 (A:148-177)
Exon 1.7 (A:177-183)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000328649
1
ENSE00001299592
chr15:
90777279-90777067
213
CIB1_HUMAN
1-17
17
1
A:1-9
9
1.2
ENST00000328649
2
ENSE00001329112
chr15:
90776935-90776901
35
CIB1_HUMAN
18-29
12
1
A:10-21
12
1.3
ENST00000328649
3
ENSE00001290832
chr15:
90775559-90775451
109
CIB1_HUMAN
29-65
37
1
A:21-57
37
1.4
ENST00000328649
4
ENSE00001318820
chr15:
90774739-90774589
151
CIB1_HUMAN
66-116
51
1
A:58-108
51
1.5
ENST00000328649
5
ENSE00001291592
chr15:
90774445-90774327
119
CIB1_HUMAN
116-155
40
1
A:108-147
40
1.6
ENST00000328649
6
ENSE00001309613
chr15:
90774254-90774166
89
CIB1_HUMAN
156-185
30
1
A:148-177
30
1.7
ENST00000328649
7
ENSE00001302723
chr15:
90773737-90773207
531
CIB1_HUMAN
185-191
7
1
A:177-183
7
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1dgua_ (A:)
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Folds
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calcium- and integrin-binding protein, CIB
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1dgua_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1dguA00 (A:1-183)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1dguA00
A:1-183
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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