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1DG6
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO2L/TRAIL
Authors
:
S. G. Hymowitz, M. P. O'Connell, M. H. Ultsch, A. M. De Vos, R. F. Kelley
Date
:
23 Nov 99 (Deposition) - 26 Jan 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Cytokine, Tnf, Trimer, Zinc-Binding Site, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Hymowitz, M. P. O'Connell, M. H. Ultsch, A. Hurst, K. Totpal, A. Ashkenazi, A. M. De Vos, R. F. Kelley
A Unique Zinc-Binding Site Revealed By A High-Resolution X-Ray Structure Of Homotrimeric Apo2L/Trail.
Biochemistry V. 39 633 2000
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:230 , CL A:406
BINDING SITE FOR RESIDUE ZN A 300
2
AC2
SOFTWARE
CYS A:230 , ZN A:300
BINDING SITE FOR RESIDUE CL A 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: TNF_2 (A:123-280)
2: TNF_1 (A:174-190)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNF_2
PS50049
TNF family profile.
TNF10_HUMAN
123-280
1
A:123-280
2
TNF_1
PS00251
TNF family signature.
TNF10_HUMAN
174-190
1
A:174-190
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Exons
(2, 2)
Info
All Exons
Exon 1.5a (A:120-130)
Exon 1.7c (A:142-281 (gaps))
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All Exon Boundaries
1: Boundary 1.4a/1.5a
2: Boundary 1.5a/1.7c
3: Boundary 1.7c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000241261
1a
ENSE00001929619
chr3:
172241297-172241043
255
TNF10_HUMAN
1-44
44
0
-
-
1.3
ENST00000241261
3
ENSE00000826259
chr3:
172232788-172232651
138
TNF10_HUMAN
45-90
46
0
-
-
1.4a
ENST00000241261
4a
ENSE00001015416
chr3:
172229449-172229407
43
TNF10_HUMAN
91-105
15
0
-
-
1.5a
ENST00000241261
5a
ENSE00001693878
chr3:
172227111-172227007
105
TNF10_HUMAN
105-140
36
1
A:120-130
11
1.7c
ENST00000241261
7c
ENSE00001858222
chr3:
172224709-172223298
1412
TNF10_HUMAN
140-281
142
1
A:142-281 (gaps)
140
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1dg6a_ (A:)
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(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
Apoptosis-2 ligand, apo2l/TRAIL
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1dg6a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1dg6A00 (A:120-281)
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Homologous Superfamilies
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)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.40, no name defined]
(56)
Human (Homo sapiens)
(38)
1a
1dg6A00
A:120-281
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (36 KB)
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