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1DFA
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PI-SCEI IN C2 SPACE GROUP
Authors
:
D. Hu, M. Crist, X. Duan, F. A. Quiocho, F. S. Gimble
Date
:
18 Nov 99 (Deposition) - 08 Dec 99 (Release) - 02 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Intein, Homing Endonuclease, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Hu, M. Crist, X. Duan, F. A. Quiocho, F. S. Gimble
Probing The Structure Of The Pi-Scei-Dna Complex By Affinity Cleavage And Affinity Photocross-Linking.
J. Biol. Chem. V. 275 2705 2000
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: INTEIN_N_TER (A:1-83)
2: INTEIN_ENDONUCLEASE (A:211-359)
3: INTEIN_C_TER (A:430-454)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTEIN_N_TER
PS50817
Intein N-terminal splicing motif profile.
VATA_YEAST
284-366
1
A:1-83
2
INTEIN_ENDONUCLEASE
PS50819
Intein DOD-type homing endonuclease domain profile.
VATA_YEAST
494-642
1
A:211-359
3
INTEIN_C_TER
PS50818
Intein C-terminal splicing motif profile.
VATA_YEAST
713-738
1
A:430-454
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:1-454 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDL185W
1
YDL185W.1
IV:126788-130003
3216
VATA_YEAST
1-1071
1071
1
A:1-454 (gaps)
454
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1dfaa1 (A:1-180,A:416-454)
2a: SCOP_d1dfaa2 (A:181-298)
2b: SCOP_d1dfaa3 (A:299-415)
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Class
:
All beta proteins
(24004)
Fold
:
Hedgehog/intein (Hint) domain
(16)
Superfamily
:
Hedgehog/intein (Hint) domain
(16)
Family
:
Intein (protein splicing domain)
(12)
Protein domain
:
VMA1-derived endonuclease (VDE) PI-Scei intein
(8)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(8)
1a
d1dfaa1
A:1-180,A:416-454
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Homing endonuclease-like
(42)
Superfamily
:
Homing endonucleases
(38)
Family
:
Intein endonuclease
(8)
Protein domain
:
VMA1-derived endonuclease (VDE) PI-SceI
(7)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
2a
d1dfaa2
A:181-298
2b
d1dfaa3
A:299-415
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1dfaA02 (A:200-303)
1b: CATH_1dfaA03 (A:304-398)
2a: CATH_1dfaA01 (A:1-180,A:416-454)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Endonuclease I-creI
(41)
Homologous Superfamily
:
Homing endonucleases
(40)
Baker's yeast (Saccharomyces cerevisiae)
(8)
1a
1dfaA02
A:200-303
1b
1dfaA03
A:304-398
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Endonuclease - Pi-scei; Chain A, domain 1
(12)
Homologous Superfamily
:
Endonuclease - Pi-scei; Chain A, domain 1
(12)
Baker's yeast (Saccharomyces cerevisiae)
(6)
2a
1dfaA01
A:1-180,A:416-454
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (93 KB)
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