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Getting 'Exon' information from database.
1DEU
Asym. Unit
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Asym.Unit (98 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN X: A CYSTEINE PROTEASE WITH THE PROREGION COVALENTLY LINKED TO THE ACTIVE SITE CYSTEINE
Authors
:
J. Sivaraman, D. K. Nagler, R. Zhang, R. Menard, M. Cygler
Date
:
15 Nov 99 (Deposition) - 18 Feb 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Cysteine Protease, Procathepsin X, Proregion, Prosegment, Hydrolase
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Reference
:
J. Sivaraman, D. K. Nagler, R. Zhang, R. Menard, M. Cygler
Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine.
J. Mol. Biol. V. 295 939 2000
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010255 (A68R, chain A/B, )
2: VAR_010254 (P13PS, chain A/B, )
3: VAR_033719 (A225T, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010255
A
129
R
CATZ_HUMAN
Unclassified
---
A/B
A
68
R
2
UniProt
VAR_010254
P
36
S
CATZ_HUMAN
Polymorphism
---
A/B
P
13P
S
3
UniProt
VAR_033719
A
286
T
CATZ_HUMAN
Polymorphism
34069356
A/B
A
225
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_ASN (A:195-214,B:195-214)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATZ_HUMAN
256-275
2
A:195-214
B:195-214
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Exons
(6, 12)
Info
All Exons
Exon 1.1a (A:6P-25P | B:4P-15P)
Exon 1.2a (A:25P-42 (gaps) | B:32P-42 (gaps))
Exon 1.3 (A:42-102 | B:42-102)
Exon 1.4a (A:102-152 | B:102-152)
Exon 1.5 (A:152-206 | B:152-206)
Exon 1.6 (A:207-242 | B:207-242)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000217131
1a
ENSE00001454208
chr20:
57582302-57582041
262
CATZ_HUMAN
1-48
48
2
A:6P-25P
B:4P-15P
20
12
1.2a
ENST00000217131
2a
ENSE00000663006
chr20:
57581540-57581377
164
CATZ_HUMAN
48-103
56
2
A:25P-42 (gaps)
B:32P-42 (gaps)
57
50
1.3
ENST00000217131
3
ENSE00000663005
chr20:
57576699-57576520
180
CATZ_HUMAN
103-163
61
2
A:42-102
B:42-102
61
61
1.4a
ENST00000217131
4a
ENSE00000663004
chr20:
57572808-57572658
151
CATZ_HUMAN
163-213
51
2
A:102-152
B:102-152
51
51
1.5
ENST00000217131
5
ENSE00000663003
chr20:
57571856-57571694
163
CATZ_HUMAN
213-267
55
2
A:152-206
B:152-206
55
55
1.6
ENST00000217131
6
ENSE00000845864
chr20:
57570814-57570240
575
CATZ_HUMAN
268-303
36
2
A:207-242
B:207-242
36
36
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1deua_ (A:)
1b: SCOP_d1deub_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
(Pro)cathepsin X
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1deua_
A:
1b
d1deub_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1deuB00 (B:4P-242)
1b: CATH_1deuA00 (A:6P-242)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Human (Homo sapiens)
(92)
1a
1deuB00
B:4P-242
1b
1deuA00
A:6P-242
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Pfam Domains
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Asym.Unit (98 KB)
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