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1DEG
Asym. Unit
Info
Asym.Unit (8 KB)
Biol.Unit 1 (5 KB)
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(1)
Title
:
THE LINKER OF DES-GLU84 CALMODULIN IS BENT AS SEEN IN THE CRYSTAL STRUCTURE
Authors
:
S. Raghunathan, R. Chandross, B. P. Cheng, A. Persechini, S. E. Sobottk, R. H. Kretsinger
Date
:
07 Jun 93 (Deposition) - 31 May 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Calcium-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Raghunathan, R. J. Chandross, B. P. Cheng, A. Persechini, S. E. Sobottka, R. H. Kretsinger
The Linker Of Des-Glu84-Calmodulin Is Bent.
Proc. Natl. Acad. Sci. Usa V. 90 6869 1993
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: EF1 (UNKNOWN)
4: EF2 (UNKNOWN)
5: EF3 (UNKNOWN)
6: EF4 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:27
BINDING SITE FOR RESIDUE CA A 1
2
AC2
SOFTWARE
ILE A:100
BINDING SITE FOR RESIDUE CA A 3
3
EF1
UNKNOWN
ASP A:20 , LYS A:21 , ASP A:22 , GLY A:23 , ASP A:24 , GLY A:25 , THR A:26 , ILE A:27 , THR A:28 , THR A:29 , LYS A:30 , GLU A:31
NULL
4
EF2
UNKNOWN
ASP A:56 , ALA A:57 , ASP A:58 , GLY A:59 , ASN A:60 , GLY A:61 , THR A:62 , ILE A:63 , ASP A:64 , PHE A:65 , PRO A:66 , GLU A:67
NULL
5
EF3
UNKNOWN
ASP A:93 , LYS A:94 , ASP A:95 , GLY A:96 , ASN A:97 , GLY A:98 , TYR A:99 , ILE A:100 , SER A:101 , ALA A:102 , ALA A:103 , GLU A:104
NULL
6
EF4
UNKNOWN
ASN A:129 , ILE A:130 , ASP A:131 , GLY A:132 , ASP A:133 , GLY A:134 , GLN A:135 , VAL A:136 , ASN A:137 , TYR A:138 , GLU A:139 , GLU A:140
NULL
[
close Site info
]
SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_069222 (N53I, chain A, )
02: VAR_048585 (M72T, chain A, )
03: VAR_073275 (F89L, chain A, )
04: VAR_073276 (D95V, chain A, )
05: VAR_073277 (N97I, chain A, )
06: VAR_069223 (N97S, chain A, )
07: VAR_073278 (N129G, chain A, )
08: VAR_073279 (D131E, chain A, )
09: VAR_073280 (D133H, chain A, )
10: VAR_073281 (Q135P, chain A, )
11: VAR_073282 (F141L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
A
N
53
I
02
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
A
M
72
T
03
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
A
F
89
L
04
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
A
D
95
V
05
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
A
N
97
I
06
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
A
N
97
S
07
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
A
N
129
G
08
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
A
D
131
E
09
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
A
D
133
H
10
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
A
Q
135
P
11
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
A
F
141
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:7-42|A:43-78|A:80-115|A:116-142,...)
2: EF_HAND_1 (A:20-32|A:56-68|A:93-105|A:130-141...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM_ORYLA
1-36
37-72
74-109
110-136
4
A:7-42
A:43-78
A:80-115
A:116-142
CALM1_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM_ANAPL
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM_BOVIN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM_CHICK
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CAM2B_XENLA
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM_RABIT
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM_TETCF
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CAM2A_XENLA
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM3_MOUSE
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM3_RAT
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALMA_ARBPU
8-43
44-79
81-116
117-142
4
A:7-42
A:43-78
A:80-115
A:116-141
CALM_ONCSP
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM1_MOUSE
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM1_RAT
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM1_XENLA
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM2_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM2_MOUSE
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM2_RAT
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
CALM3_HUMAN
8-43
44-79
81-116
117-149
4
A:7-42
A:43-78
A:80-115
A:116-147
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM_ORYLA
14-26
50-62
87-99
123-135
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM1_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM_ANAPL
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM_BOVIN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM_CHICK
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CAM2B_XENLA
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM_RABIT
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM_TETCF
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CAM2A_XENLA
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM3_MOUSE
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM3_RAT
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALMA_ARBPU
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM_ONCSP
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM1_MOUSE
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM1_RAT
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM1_XENLA
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM2_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM2_MOUSE
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM2_RAT
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
CALM3_HUMAN
21-33
57-69
94-106
130-142
4
A:20-32
A:56-68
A:93-105
A:130-141
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1dega_ (A:)
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(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Cow (Bos taurus) [TaxId: 9913]
(16)
1a
d1dega_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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