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Getting 'Exon' information from database.
1DE4
Asym. Unit
Info
Asym.Unit (503 KB)
Biol.Unit 1 (333 KB)
Biol.Unit 2 (333 KB)
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(1)
Title
:
HEMOCHROMATOSIS PROTEIN HFE COMPLEXED WITH TRANSFERRIN RECEPTOR
Authors
:
M. J. Bennett, J. A. Lebron, P. J. Bjorkman
Date
:
12 Nov 99 (Deposition) - 19 Jan 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I (2x)
Keywords
:
Hfe, Hereditary Hemochromatosis, Mhc Class I, Transferrin Receptor, Metal Transport Inhibitor-Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Bennett, J. A. Lebron, P. J. Bjorkman
Crystal Structure Of The Hereditary Haemochromatosis Protei Hfe Complexed With Transferrin Receptor.
Nature V. 403 46 2000
[
close entry info
]
Hetero Components
(3, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: GLYCEROL (GOLa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE C:187 , ASN C:317 , PHE C:321 , GLU C:383 , LYS D:151
BINDING SITE FOR RESIDUE NAG C 900
2
AC2
SOFTWARE
PHE F:187 , ASN F:317 , GLU F:383
BINDING SITE FOR RESIDUE NAG F 901
3
AC3
SOFTWARE
ARG G:149 , LYS G:151 , PHE I:187 , ASN I:317 , GLU I:383
BINDING SITE FOR RESIDUE NAG I 902
4
AC4
SOFTWARE
THR C:310 , PHE C:313 , GLU C:465 , GLU C:468
BINDING SITE FOR RESIDUE CA C 801
5
AC5
SOFTWARE
THR F:310 , PHE F:313 , GLU F:465 , GLU F:468
BINDING SITE FOR RESIDUE CA F 802
6
AC6
SOFTWARE
THR I:310 , PHE I:313 , GLU I:465 , GLU I:468
BINDING SITE FOR RESIDUE CA I 803
7
AC7
SOFTWARE
ARG G:153 , GLN G:156 , ARG I:646 , GLY I:647
BINDING SITE FOR RESIDUE GOL G 309
[
close Site info
]
SAPs(SNPs)/Variants
(21, 63)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_042507 (G21D, chain A/D/G, )
02: VAR_008111 (V31M, chain A/D/G, )
03: VAR_008112 (V37M, chain A/D/G, )
04: VAR_004396 (H41D, chain A/D/G, )
05: VAR_004397 (S43C, chain A/D/G, )
06: VAR_042508 (R44C, chain A/D/G, )
07: VAR_008729 (G71R, chain A/D/G, )
08: VAR_008730 (I83T, chain A/D/G, )
09: VAR_008113 (Q105H, chain A/D/G, )
10: VAR_012737 (S142S, chain C/F/I, )
11: VAR_042509 (A154V, chain A/D/G, )
12: VAR_020270 (T195I, chain A/D/G, )
13: VAR_042510 (R202G, chain A/D/G, )
14: VAR_062279 (R202Q, chain A/D/G, )
15: VAR_051806 (L212V, chain C/F/I, )
16: VAR_008731 (E255K, chain A/D/G, )
17: VAR_004398 (C260Y, chain A/D/G, )
18: VAR_037304 (Q261P, chain A/D/G, )
19: VAR_042511 (V273A, chain A/D/G, )
20: VAR_051807 (G420S, chain C/F/I, )
21: VAR_051808 (R677H, chain C/F/I, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_042507
G
43
D
HFE_HUMAN
Disease (HFE1)
---
A/D/G
G
21
D
02
UniProt
VAR_008111
V
53
M
HFE_HUMAN
Polymorphism
28934889
A/D/G
V
31
M
03
UniProt
VAR_008112
V
59
M
HFE_HUMAN
Polymorphism
28934890
A/D/G
V
37
M
04
UniProt
VAR_004396
H
63
D
HFE_HUMAN
Polymorphism
1799945
A/D/G
H
41
D
05
UniProt
VAR_004397
S
65
C
HFE_HUMAN
Disease (HFE1)
1800730
A/D/G
S
43
C
06
UniProt
VAR_042508
R
66
C
HFE_HUMAN
Disease (HFE1)
---
A/D/G
R
44
C
07
UniProt
VAR_008729
G
93
R
HFE_HUMAN
Disease (HFE1)
28934597
A/D/G
G
71
R
08
UniProt
VAR_008730
I
105
T
HFE_HUMAN
Disease (HFE1)
28934596
A/D/G
I
83
T
09
UniProt
VAR_008113
Q
127
H
HFE_HUMAN
Disease (HFE1)
28934595
A/D/G
Q
105
H
10
UniProt
VAR_012737
G
142
S
TFR1_HUMAN
Polymorphism
3817672
C/F/I
S
142
S
11
UniProt
VAR_042509
A
176
V
HFE_HUMAN
Unclassified
---
A/D/G
A
154
V
12
UniProt
VAR_020270
T
217
I
HFE_HUMAN
Polymorphism
4986950
A/D/G
T
195
I
13
UniProt
VAR_042510
R
224
G
HFE_HUMAN
Disease (HFE1)
---
A/D/G
R
202
G
14
UniProt
VAR_062279
R
224
Q
HFE_HUMAN
Polymorphism
62625346
A/D/G
R
202
Q
15
UniProt
VAR_051806
L
212
V
TFR1_HUMAN
Polymorphism
41301381
C/F/I
L
212
V
16
UniProt
VAR_008731
E
277
K
HFE_HUMAN
Polymorphism
140080192
A/D/G
E
255
K
17
UniProt
VAR_004398
C
282
Y
HFE_HUMAN
Disease (HFE1)
1800562
A/D/G
C
260
Y
18
UniProt
VAR_037304
Q
283
P
HFE_HUMAN
Disease (HFE1)
---
A/D/G
Q
261
P
19
UniProt
VAR_042511
V
295
A
HFE_HUMAN
Disease (HFE1)
143175221
A/D/G
V
273
A
20
UniProt
VAR_051807
G
420
S
TFR1_HUMAN
Polymorphism
41295879
C/F/I
G
420
S
21
UniProt
VAR_051808
R
677
H
TFR1_HUMAN
Polymorphism
41298067
C/F/I
R
677
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,E:78-84,H:78-84,A:258-264,...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
3
B:78-84
E:78-84
H:78-84
HFE_HUMAN
280-286
3
A:258-264
D:258-264
G:258-264
[
close PROSITE info
]
Exons
(20, 60)
Info
All Exons
Exon 1.1b (A:4-4 | D:4-4 | G:4-4)
Exon 1.2a (A:4-92 | D:4-92 | G:4-92)
Exon 1.2d (A:92-184 | D:92-184 | G:92-184)
Exon 1.3c (A:184-275 | D:184-275 | G:184-275)
Exon 2.5 (C:122-145 | F:122-145 | I:122-145)
Exon 2.6 (C:145-195 | F:145-195 | I:145-195)
Exon 2.7b (C:195-229 | F:195-229 | I:195-229)
Exon 2.8b (C:230-267 | F:230-267 | I:230-267)
Exon 2.9 (C:268-300 | F:268-300 | I:268-300)
Exon 2.10b (C:301-347 | F:301-347 | I:301-347)
Exon 2.11a (C:347-400 | F:347-400 | I:347-400)
Exon 2.12 (C:400-440 | F:400-440 | I:400-440)
Exon 2.14c (C:440-468 | F:440-468 | I:440-468)
Exon 2.14d (C:469-490 | F:469-490 | I:469-490)
Exon 2.15c (C:490-512 | F:490-512 | I:490-512)
Exon 2.16b (C:513-532 | F:513-532 | I:513-532)
Exon 2.17b (C:532-559 | F:532-559 | I:532-559)
Exon 2.18c (C:560-633 | F:560-633 | I:560-633)
Exon 2.19c (C:634-680 | F:634-680 | I:634-680)
Exon 2.20a (C:681-756 | F:681-756 | I:681-756)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2a
03: Boundary 1.2a/1.2d
04: Boundary 1.2d/1.3c
05: Boundary 1.3c/1.4
06: Boundary 2.3/2.5
07: Boundary 2.5/2.6
08: Boundary 2.6/2.7b
09: Boundary 2.7b/2.8b
10: Boundary 2.8b/2.9
11: Boundary 2.9/2.10b
12: Boundary 2.10b/2.11a
13: Boundary 2.11a/2.12
14: Boundary 2.12/2.14c
15: Boundary 2.14c/2.14d
16: Boundary 2.14d/2.15c
17: Boundary 2.15c/2.16b
18: Boundary 2.16b/2.17b
19: Boundary 2.17b/2.18c
20: Boundary 2.18c/2.19c
21: Boundary 2.19c/2.20a
22: Boundary 2.20a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000357618
1b
ENSE00002141786
chr6:
26087547-26087744
198
HFE_HUMAN
1-26
26
3
A:4-4
D:4-4
G:4-4
1
1
1
1.2a
ENST00000357618
2a
ENSE00001984790
chr6:
26091069-26091332
264
HFE_HUMAN
26-114
89
3
A:4-92
D:4-92
G:4-92
89
89
89
1.2d
ENST00000357618
2d
ENSE00001641676
chr6:
26091542-26091817
276
HFE_HUMAN
114-206
93
3
A:92-184
D:92-184
G:92-184
93
93
93
1.3c
ENST00000357618
3c
ENSE00001682402
chr6:
26092913-26093188
276
HFE_HUMAN
206-298
93
3
A:184-275
D:184-275
G:184-275
92
92
92
1.4
ENST00000357618
4
ENSE00001974207
chr6:
26093347-26093460
114
HFE_HUMAN
298-336
39
0
-
-
1.5i
ENST00000357618
5i
ENSE00001913586
chr6:
26094414-26098571
4158
HFE_HUMAN
336-348
13
0
-
-
2.1e
ENST00000392396
1e
ENSE00001511658
chr3:
195808961-195808702
260
TFR1_HUMAN
-
0
0
-
-
2.2
ENST00000392396
2
ENSE00002184017
chr3:
195803993-195803935
59
TFR1_HUMAN
1-12
12
0
-
-
2.3
ENST00000392396
3
ENSE00000336901
chr3:
195802231-195802030
202
TFR1_HUMAN
13-80
68
0
-
-
2.5
ENST00000392396
5
ENSE00001645063
chr3:
195800996-195800801
196
TFR1_HUMAN
80-145
66
3
C:122-145
F:122-145
I:122-145
24
24
24
2.6
ENST00000392396
6
ENSE00001615518
chr3:
195799023-195798874
150
TFR1_HUMAN
145-195
51
3
C:145-195
F:145-195
I:145-195
51
51
51
2.7b
ENST00000392396
7b
ENSE00000781814
chr3:
195798369-195798267
103
TFR1_HUMAN
195-229
35
3
C:195-229
F:195-229
I:195-229
35
35
35
2.8b
ENST00000392396
8b
ENSE00000336905
chr3:
195796439-195796326
114
TFR1_HUMAN
230-267
38
3
C:230-267
F:230-267
I:230-267
38
38
38
2.9
ENST00000392396
9
ENSE00000781817
chr3:
195795001-195794903
99
TFR1_HUMAN
268-300
33
3
C:268-300
F:268-300
I:268-300
33
33
33
2.10b
ENST00000392396
10b
ENSE00000781818
chr3:
195794528-195794389
140
TFR1_HUMAN
301-347
47
3
C:301-347
F:301-347
I:301-347
47
47
47
2.11a
ENST00000392396
11a
ENSE00000781819
chr3:
195792471-195792314
158
TFR1_HUMAN
347-400
54
3
C:347-400
F:347-400
I:347-400
54
54
54
2.12
ENST00000392396
12
ENSE00000781821
chr3:
195791299-195791180
120
TFR1_HUMAN
400-440
41
3
C:400-440
F:400-440
I:400-440
41
41
41
2.14c
ENST00000392396
14c
ENSE00001189905
chr3:
195789810-195789725
86
TFR1_HUMAN
440-468
29
3
C:440-468
F:440-468
I:440-468
29
29
29
2.14d
ENST00000392396
14d
ENSE00000781823
chr3:
195789516-195789453
64
TFR1_HUMAN
469-490
22
3
C:469-490
F:469-490
I:469-490
22
22
22
2.15c
ENST00000392396
15c
ENSE00000781824
chr3:
195787118-195787051
68
TFR1_HUMAN
490-512
23
3
C:490-512
F:490-512
I:490-512
23
23
23
2.16b
ENST00000392396
16b
ENSE00000781826
chr3:
195785503-195785445
59
TFR1_HUMAN
513-532
20
3
C:513-532
F:513-532
I:513-532
20
20
20
2.17b
ENST00000392396
17b
ENSE00000781827
chr3:
195785236-195785155
82
TFR1_HUMAN
532-559
28
3
C:532-559
F:532-559
I:532-559
28
28
28
2.18c
ENST00000392396
18c
ENSE00000781828
chr3:
195782172-195781951
222
TFR1_HUMAN
560-633
74
3
C:560-633
F:560-633
I:560-633
74
74
74
2.19c
ENST00000392396
19c
ENSE00000781829
chr3:
195780429-195780289
141
TFR1_HUMAN
634-680
47
3
C:634-680
F:634-680
I:634-680
47
47
47
2.20a
ENST00000392396
20a
ENSE00001405345
chr3:
195779055-195776347
2709
TFR1_HUMAN
681-760
80
3
C:681-756
F:681-756
I:681-756
76
76
76
[
close EXON info
]
SCOP Domains
(6, 18)
Info
All SCOP Domains
1a: SCOP_d1de4c1 (C:609-756)
1b: SCOP_d1de4f1 (F:609-756)
1c: SCOP_d1de4i1 (I:609-756)
2a: SCOP_d1de4b_ (B:)
2b: SCOP_d1de4e_ (E:)
2c: SCOP_d1de4h_ (H:)
3a: SCOP_d1de4a1 (A:182-275)
3b: SCOP_d1de4d1 (D:182-275)
3c: SCOP_d1de4g1 (G:182-275)
4a: SCOP_d1de4a2 (A:4-181)
4b: SCOP_d1de4d2 (D:4-181)
4c: SCOP_d1de4g2 (G:4-181)
5a: SCOP_d1de4c3 (C:122-189,C:383-608)
5b: SCOP_d1de4f3 (F:122-189,F:383-608)
5c: SCOP_d1de4i3 (I:122-189,I:383-608)
6a: SCOP_d1de4c2 (C:190-382)
6b: SCOP_d1de4f2 (F:190-382)
6c: SCOP_d1de4i2 (I:190-382)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
N-cbl like
(37)
Superfamily
:
Transferrin receptor-like dimerisation domain
(18)
Family
:
Transferrin receptor-like dimerisation domain
(18)
Protein domain
:
Transferrin receptor ectodomain, C-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1de4c1
C:609-756
1b
d1de4f1
F:609-756
1c
d1de4i1
I:609-756
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
2a
d1de4b_
B:
2b
d1de4e_
E:
2c
d1de4h_
H:
Protein domain
:
Hemochromatosis protein Hfe, alpha-3 domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
3a
d1de4a1
A:182-275
3b
d1de4d1
D:182-275
3c
d1de4g1
G:182-275
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Hemochromatosis protein Hfe, alpha-1 and alpha-2 domains
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
4a
d1de4a2
A:4-181
4b
d1de4d2
D:4-181
4c
d1de4g2
G:4-181
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
FolH catalytic domain-like
(18)
Protein domain
:
Transferrin receptor ectodomain, protease-like domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
5a
d1de4c3
C:122-189,C:383-608
5b
d1de4f3
F:122-189,F:383-608
5c
d1de4i3
I:122-189,I:383-608
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
PA domain
(18)
Family
:
PA domain
(18)
Protein domain
:
Transferrin receptor ectodomain, apical domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
6a
d1de4c2
C:190-382
6b
d1de4f2
F:190-382
6c
d1de4i2
I:190-382
[
close SCOP info
]
CATH Domains
(5, 18)
Info
all CATH domains
1a: CATH_1de4A01 (A:4-182)
1b: CATH_1de4D01 (D:4-182)
1c: CATH_1de4G01 (G:4-182)
2a: CATH_1de4C01 (C:122-194,C:380-613)
2b: CATH_1de4F01 (F:122-194,F:380-613)
2c: CATH_1de4I01 (I:122-194,I:380-613)
3a: CATH_1de4C02 (C:197-377)
3b: CATH_1de4F02 (F:197-377)
3c: CATH_1de4I02 (I:197-377)
4a: CATH_1de4C03 (C:614-755)
4b: CATH_1de4F03 (F:614-755)
4c: CATH_1de4I03 (I:614-755)
5a: CATH_1de4B00 (B:1-99)
5b: CATH_1de4E00 (E:1-99)
5c: CATH_1de4H00 (H:1-99)
5d: CATH_1de4A02 (A:183-273)
5e: CATH_1de4D02 (D:183-273)
5f: CATH_1de4G02 (G:183-273)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1de4A01
A:4-182
1b
1de4D01
D:4-182
1c
1de4G01
G:4-182
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Human (Homo sapiens)
(10)
2a
1de4C01
C:122-194,C:380-613
2b
1de4F01
F:122-194,F:380-613
2c
1de4I01
I:122-194,I:380-613
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Glucose Oxidase; domain 1
(52)
Homologous Superfamily
:
[code=3.50.30.30, no name defined]
(6)
Human (Homo sapiens)
(2)
3a
1de4C02
C:197-377
3b
1de4F02
F:197-377
3c
1de4I02
I:197-377
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Transcription Elongation Factor S-II; Chain A
(14)
Homologous Superfamily
:
[code=1.20.930.40, no name defined]
(3)
Human (Homo sapiens)
(2)
4a
1de4C03
C:614-755
4b
1de4F03
F:614-755
4c
1de4I03
I:614-755
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
5a
1de4B00
B:1-99
5b
1de4E00
E:1-99
5c
1de4H00
H:1-99
5d
1de4A02
A:183-273
5e
1de4D02
D:183-273
5f
1de4G02
G:183-273
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