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1DDX
Asym. Unit
Info
Asym.Unit (380 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (189 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MIXTURE OF ARACHIDONIC ACID AND PROSTAGLANDIN BOUND TO THE CYCLOOXYGENASE ACTIVE SITE OF COX-2: PROSTAGLANDIN STRUCTURE
Authors
:
J. R. Kiefer, J. L. Pawlitz, K. T. Moreland, R. A. Stegeman, J. K. Gierse, A. M. Stevens, D. C. Goodwin, S. W. Rowlinson, L. J. Marnett, W. C. Stall R. G. Kurumbail
Date
:
11 Nov 99 (Deposition) - 16 May 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cox-2, Cyclooxygenase, Prostaglandin, Arachidonate, Endoperoxide, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Kiefer, J. L. Pawlitz, K. T. Moreland, R. A. Stegeman, W. F. Hood, J. K. Gierse, A. M. Stevens, D. C. Goodwin, S. W. Rowlinson, L. J. Marnett, W. C. Stallings, R. G. Kurumbail
Structural Insights Into The Stereochemistry Of The Cyclooxygenase Reaction.
Nature V. 405 97 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 24)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3a: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXa)
3b: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXb)
3c: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXc)
3d: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
4
Ligand/Ion
B-OCTYLGLUCOSIDE
2
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PGX
4
Ligand/Ion
7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,3-DIOXA-BICYCLO[2.2.1]HEPT-5-YL]-HEPT-5-ENOIC ACID
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:40 , TYR A:55 , ASN A:68 , NAG A:662
BINDING SITE FOR RESIDUE NAG A 661
02
AC2
SOFTWARE
NAG A:661
BINDING SITE FOR RESIDUE NAG A 662
03
AC3
SOFTWARE
ASN A:144 , SER A:146 , TYR A:147 , ARG A:216
BINDING SITE FOR RESIDUE NAG A 671
04
AC4
SOFTWARE
GLN A:406 , ASN A:410 , GLU A:416
BINDING SITE FOR RESIDUE NAG A 681
05
AC5
SOFTWARE
PRO B:1040 , TYR B:1055 , ASN B:1068 , NAG B:1662
BINDING SITE FOR RESIDUE NAG B 1661
06
AC6
SOFTWARE
NAG B:1661
BINDING SITE FOR RESIDUE NAG B 1662
07
AC7
SOFTWARE
ASN B:1144 , SER B:1146 , TYR B:1147 , ARG B:1216
BINDING SITE FOR RESIDUE NAG B 1671
08
AC8
SOFTWARE
GLN B:1406 , ASN B:1410 , GLU B:1416
BINDING SITE FOR RESIDUE NAG B 1681
09
AC9
SOFTWARE
PRO C:2040 , ASN C:2068 , NAG C:2662
BINDING SITE FOR RESIDUE NAG C 2661
10
BC1
SOFTWARE
NAG C:2661
BINDING SITE FOR RESIDUE NAG C 2662
11
BC2
SOFTWARE
GLU C:2140 , ASN C:2144 , SER C:2146 , TYR C:2147 , ARG C:2216
BINDING SITE FOR RESIDUE NAG C 2671
12
BC3
SOFTWARE
GLN C:2406 , ASN C:2410 , GLU C:2416
BINDING SITE FOR RESIDUE NAG C 2681
13
BC4
SOFTWARE
PRO D:3040 , GLU D:3067 , ASN D:3068 , NAG D:3662
BINDING SITE FOR RESIDUE NAG D 3661
14
BC5
SOFTWARE
NAG D:3661
BINDING SITE FOR RESIDUE NAG D 3662
15
BC6
SOFTWARE
ASN D:3144 , SER D:3146 , TYR D:3147 , ARG D:3216
BINDING SITE FOR RESIDUE NAG D 3671
16
BC7
SOFTWARE
GLN D:3406 , ASN D:3410 , GLU D:3416
BINDING SITE FOR RESIDUE NAG D 3681
17
BC8
SOFTWARE
THR A:88 , TYR A:91
BINDING SITE FOR RESIDUE BOG A 702
18
BC9
SOFTWARE
THR B:1088 , PHE B:1096
BINDING SITE FOR RESIDUE BOG B 1702
19
CC1
SOFTWARE
TYR C:2091 , PRO C:2514
BINDING SITE FOR RESIDUE BOG C 2702
20
CC2
SOFTWARE
THR D:3085 , ASN D:3087 , THR D:3088 , TYR D:3091
BINDING SITE FOR RESIDUE BOG D 3702
21
CC3
SOFTWARE
PHE A:205 , PHE A:209 , TYR A:348 , VAL A:349 , LEU A:352 , SER A:353 , PHE A:381 , LEU A:384 , TYR A:385 , TRP A:387 , GLY A:526 , SER A:530 , GLY A:533 , LEU A:534
BINDING SITE FOR RESIDUE PGX A 701
22
CC4
SOFTWARE
PHE B:1205 , THR B:1206 , PHE B:1209 , PHE B:1210 , VAL B:1228 , TYR B:1348 , VAL B:1349 , LEU B:1352 , LEU B:1384 , TYR B:1385 , TRP B:1387 , VAL B:1523 , GLY B:1526 , ALA B:1527 , SER B:1530 , GLY B:1533 , LEU B:1534 , HOH B:4074
BINDING SITE FOR RESIDUE PGX B 1701
23
CC5
SOFTWARE
PHE C:2205 , THR C:2206 , PHE C:2209 , PHE C:2210 , TYR C:2348 , VAL C:2349 , LEU C:2352 , LEU C:2384 , TYR C:2385 , TRP C:2387 , VAL C:2523 , GLY C:2526 , ALA C:2527 , SER C:2530 , GLY C:2533 , LEU C:2534
BINDING SITE FOR RESIDUE PGX C 2701
24
CC6
SOFTWARE
PHE D:3205 , PHE D:3209 , TYR D:3348 , VAL D:3349 , LEU D:3352 , SER D:3353 , PHE D:3381 , LEU D:3384 , TYR D:3385 , TRP D:3387 , GLY D:3526 , SER D:3530 , GLY D:3533 , LEU D:3534
BINDING SITE FOR RESIDUE PGX D 3701
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:110-583,B:1110-1583,C:2110-2583,...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
4
A:110-583
B:1110-1583
C:2110-2583
D:3110-3583
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1ddxa1 (A:74-583)
1b: SCOP_d1ddxb1 (B:1074-1583)
1c: SCOP_d1ddxc1 (C:2074-2583)
1d: SCOP_d1ddxd1 (D:3074-3583)
2a: SCOP_d1ddxa2 (A:33-73)
2b: SCOP_d1ddxb2 (B:1033-1073)
2c: SCOP_d1ddxc2 (C:2033-2073)
2d: SCOP_d1ddxd2 (D:3033-3073)
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Classes
(
)
(
)
Folds
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)
(
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Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Mouse (Mus musculus) [TaxId: 10090]
(11)
1a
d1ddxa1
A:74-583
1b
d1ddxb1
B:1074-1583
1c
d1ddxc1
C:2074-2583
1d
d1ddxd1
D:3074-3583
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Mouse (Mus musculus) [TaxId: 10090]
(11)
2a
d1ddxa2
A:33-73
2b
d1ddxb2
B:1033-1073
2c
d1ddxc2
C:2033-2073
2d
d1ddxd2
D:3033-3073
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1ddxA02 (A:74-583)
1b: CATH_1ddxB02 (B:1074-1583)
1c: CATH_1ddxC02 (C:2074-2583)
1d: CATH_1ddxD02 (D:3074-3583)
2a: CATH_1ddxA01 (A:33-73)
2b: CATH_1ddxB01 (B:1033-1073)
2c: CATH_1ddxC01 (C:2033-2073)
2d: CATH_1ddxD01 (D:3033-3073)
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
House mouse (Mus musculus)
(8)
1a
1ddxA02
A:74-583
1b
1ddxB02
B:1074-1583
1c
1ddxC02
C:2074-2583
1d
1ddxD02
D:3074-3583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
House mouse (Mus musculus)
(18)
2a
1ddxA01
A:33-73
2b
1ddxB01
B:1033-1073
2c
1ddxC01
C:2033-2073
2d
1ddxD01
D:3033-3073
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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