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1DDX
Biol. Unit 2
Info
Asym.Unit (380 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (189 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MIXTURE OF ARACHIDONIC ACID AND PROSTAGLANDIN BOUND TO THE CYCLOOXYGENASE ACTIVE SITE OF COX-2: PROSTAGLANDIN STRUCTURE
Authors
:
J. R. Kiefer, J. L. Pawlitz, K. T. Moreland, R. A. Stegeman, J. K. Gierse, A. M. Stevens, D. C. Goodwin, S. W. Rowlinson, L. J. Marnett, W. C. Stall R. G. Kurumbail
Date
:
11 Nov 99 (Deposition) - 16 May 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Cox-2, Cyclooxygenase, Prostaglandin, Arachidonate, Endoperoxide, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Kiefer, J. L. Pawlitz, K. T. Moreland, R. A. Stegeman, W. F. Hood, J. K. Gierse, A. M. Stevens, D. C. Goodwin, S. W. Rowlinson, L. J. Marnett, W. C. Stallings, R. G. Kurumbail
Structural Insights Into The Stereochemistry Of The Cyclooxygenase Reaction.
Nature V. 405 97 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3a: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXa)
3b: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXb)
3c: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXc)
3d: 7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,... (PGXd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
2
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PGX
2
Ligand/Ion
7-[6-(3-HYDROPEROXY-OCT-1-ENYL)-2,3-DIOXA-BICYCLO[2.2.1]HEPT-5-YL]-HEPT-5-ENOIC ACID
[
close Hetero Component info
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Sites
(12, 12)
Info
All Sites
01: AC9 (SOFTWARE)
02: BC1 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
PRO C:2040 , ASN C:2068 , NAG C:2662
BINDING SITE FOR RESIDUE NAG C 2661
02
BC1
SOFTWARE
NAG C:2661
BINDING SITE FOR RESIDUE NAG C 2662
03
BC2
SOFTWARE
GLU C:2140 , ASN C:2144 , SER C:2146 , TYR C:2147 , ARG C:2216
BINDING SITE FOR RESIDUE NAG C 2671
04
BC3
SOFTWARE
GLN C:2406 , ASN C:2410 , GLU C:2416
BINDING SITE FOR RESIDUE NAG C 2681
05
BC4
SOFTWARE
PRO D:3040 , GLU D:3067 , ASN D:3068 , NAG D:3662
BINDING SITE FOR RESIDUE NAG D 3661
06
BC5
SOFTWARE
NAG D:3661
BINDING SITE FOR RESIDUE NAG D 3662
07
BC6
SOFTWARE
ASN D:3144 , SER D:3146 , TYR D:3147 , ARG D:3216
BINDING SITE FOR RESIDUE NAG D 3671
08
BC7
SOFTWARE
GLN D:3406 , ASN D:3410 , GLU D:3416
BINDING SITE FOR RESIDUE NAG D 3681
09
CC1
SOFTWARE
TYR C:2091 , PRO C:2514
BINDING SITE FOR RESIDUE BOG C 2702
10
CC2
SOFTWARE
THR D:3085 , ASN D:3087 , THR D:3088 , TYR D:3091
BINDING SITE FOR RESIDUE BOG D 3702
11
CC5
SOFTWARE
PHE C:2205 , THR C:2206 , PHE C:2209 , PHE C:2210 , TYR C:2348 , VAL C:2349 , LEU C:2352 , LEU C:2384 , TYR C:2385 , TRP C:2387 , VAL C:2523 , GLY C:2526 , ALA C:2527 , SER C:2530 , GLY C:2533 , LEU C:2534
BINDING SITE FOR RESIDUE PGX C 2701
12
CC6
SOFTWARE
PHE D:3205 , PHE D:3209 , TYR D:3348 , VAL D:3349 , LEU D:3352 , SER D:3353 , PHE D:3381 , LEU D:3384 , TYR D:3385 , TRP D:3387 , GLY D:3526 , SER D:3530 , GLY D:3533 , LEU D:3534
BINDING SITE FOR RESIDUE PGX D 3701
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (C:2110-2583,D:3110-3583)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
-
-
C:2110-2583
D:3110-3583
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1ddxa1 (A:74-583)
1b: SCOP_d1ddxb1 (B:1074-1583)
1c: SCOP_d1ddxc1 (C:2074-2583)
1d: SCOP_d1ddxd1 (D:3074-3583)
2a: SCOP_d1ddxa2 (A:33-73)
2b: SCOP_d1ddxb2 (B:1033-1073)
2c: SCOP_d1ddxc2 (C:2033-2073)
2d: SCOP_d1ddxd2 (D:3033-3073)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Mouse (Mus musculus) [TaxId: 10090]
(11)
1a
d1ddxa1
A:74-583
1b
d1ddxb1
B:1074-1583
1c
d1ddxc1
C:2074-2583
1d
d1ddxd1
D:3074-3583
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Mouse (Mus musculus) [TaxId: 10090]
(11)
2a
d1ddxa2
A:33-73
2b
d1ddxb2
B:1033-1073
2c
d1ddxc2
C:2033-2073
2d
d1ddxd2
D:3033-3073
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1ddxA02 (A:74-583)
1b: CATH_1ddxB02 (B:1074-1583)
1c: CATH_1ddxC02 (C:2074-2583)
1d: CATH_1ddxD02 (D:3074-3583)
2a: CATH_1ddxA01 (A:33-73)
2b: CATH_1ddxB01 (B:1033-1073)
2c: CATH_1ddxC01 (C:2033-2073)
2d: CATH_1ddxD01 (D:3033-3073)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
House mouse (Mus musculus)
(8)
1a
1ddxA02
A:74-583
1b
1ddxB02
B:1074-1583
1c
1ddxC02
C:2074-2583
1d
1ddxD02
D:3074-3583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
House mouse (Mus musculus)
(18)
2a
1ddxA01
A:33-73
2b
1ddxB01
B:1033-1073
2c
1ddxC01
C:2033-2073
2d
1ddxD01
D:3033-3073
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Asymmetric Unit 1
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