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1DD9
Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
STRUCTURE OF THE DNAG CATALYTIC CORE
Authors
:
J. L. Keck, D. D. Roche, A. S. Lynch, J. M. Berger
Date
:
09 Nov 99 (Deposition) - 07 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Toprim, 3-Helix Bundle, Dna-Binding Protein, Rna Polymerase, Replication Protein, Primase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Keck, D. D. Roche, A. S. Lynch, J. M. Berger
Structure Of The Rna Polymerase Domain Of E. Coli Primase.
Science V. 287 2482 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: STRONTIUM ION (SRa)
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No.
Name
Count
Type
Full Name
1
SR
1
Ligand/Ion
STRONTIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:265 , SER A:284 , GLY A:286 , HOH A:509
BINDING SITE FOR RESIDUE SR A 501
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: TOPRIM (A:259-341)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TOPRIM
PS50880
Toprim domain profile.
DNAG_ECOLI
259-341
1
A:259-341
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1dd9a_ (A:)
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(
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA primase core
(6)
Superfamily
:
DNA primase core
(6)
Family
:
DNA primase DnaG catalytic core
(4)
Protein domain
:
DNA primase DnaG catalytic core
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1dd9a_
A:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1dd9A02 (A:241-367)
2a: CATH_1dd9A01 (A:115-240)
3a: CATH_1dd9A03 (A:368-426)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Dna Topoisomerase Vi A Subunit; Chain: A, domain 2
(11)
Homologous Superfamily
:
[code=3.40.1360.10, no name defined]
(9)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1dd9A02
A:241-367
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
DNA primase DNAg catalytic core, N-terminal domain
(4)
Homologous Superfamily
:
[code=3.90.980.10, no name defined]
(4)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1dd9A01
A:115-240
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Pheromone ER-1
(6)
Homologous Superfamily
:
[code=1.20.50.20, no name defined]
(4)
Escherichia coli. Organism_taxid: 562.
(3)
3a
1dd9A03
A:368-426
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Pfam Domains
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Asymmetric Unit 1
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