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1DC5
Biol. Unit 2
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Asym.Unit (110 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (209 KB)
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Title
:
STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL CHANGES
Authors
:
M. Yun, C. -G. Park, J. -Y. Kim, H. -W. Park
Date
:
04 Nov 99 (Deposition) - 23 Aug 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Gapdh, Substrate, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Yun, C. -G. Park, J. -Y. Kim, H. -W. Park
Structural Analysis Of Glyceraldehyde 3-Phosphate Dehydrogenase From Escherichia Coli: Direct Evidence Of Substrate Binding And Cofactor-Induced Conformational Changes.
Biochemistry V. 39 10702 2000
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_G3P1_ECOLI_001 (Y42I, chain A/B, )
2: VAR_G3P1_ECOLI_002 (G265D, chain A/B, )
3: VAR_G3P1_ECOLI_003 (E266A, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_G3P1_ECOLI_001
*
Y
43
I
G3P1_ECOLI
---
---
A/B
Y
42
I
2
UniProt
VAR_G3P1_ECOLI_002
*
G
266
D
G3P1_ECOLI
---
---
A/B
G
265
D
3
UniProt
VAR_G3P1_ECOLI_003
*
E
267
A
G3P1_ECOLI
---
---
A/B
E
266
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAPDH (A:147-154,B:147-154)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3P1_ECOLI
148-155
4
A:147-154
B:147-154
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1dc5a2 (A:149-312)
1b: SCOP_d1dc5b2 (B:149-312)
2a: SCOP_d1dc5a1 (A:0-148,A:313-330)
2b: SCOP_d1dc5b1 (B:0-148,B:313-330)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Escherichia coli [TaxId: 562]
(9)
1a
d1dc5a2
A:149-312
1b
d1dc5b2
B:149-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Escherichia coli [TaxId: 562]
(9)
2a
d1dc5a1
A:0-148,A:313-330
2b
d1dc5b1
B:0-148,B:313-330
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1dc5A02 (A:148-313)
1b: CATH_1dc5B02 (B:148-313)
2a: CATH_1dc5A01 (A:0-147,A:314-330)
2b: CATH_1dc5B01 (B:0-147,B:314-330)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Escherichia coli. Organism_taxid: 562
(4)
1a
1dc5A02
A:148-313
1b
1dc5B02
B:148-313
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562
(11)
2a
1dc5A01
A:0-147,A:314-330
2b
1dc5B01
B:0-147,B:314-330
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Pfam Domains
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