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1DC2
Asym. Unit
Info
Asym.Unit (782 KB)
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Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 20 STRUCTURES
Authors
:
I. -J. L. Byeon, J. Li, C. Yuan, M. -D. Tsai
Date
:
04 Nov 99 (Deposition) - 23 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Ankyrin Repeat, Helix-Turn-Helix, Helix Bundle, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Yuan, T. L. Selby, J. Li, I. J. Byeon, M. D. Tsai
Tumor Suppressor Ink4: Refinement Of P16Ink4A Structure And Determination Of P15Ink4B Structure By Comparative Modeling And Nmr Data.
Protein Sci. V. 9 1120 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(96, 96)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_001408 (D14E, chain A, )
02: VAR_001409 (L16P, chain A, )
03: VAR_001410 (A20P, chain A, )
04: VAR_001411 (A20S, chain A, )
05: VAR_001412 (G23D, chain A, )
06: VAR_001413 (R24C, chain A, )
07: VAR_001414 (R24P, chain A, )
08: VAR_058550 (R24Q, chain A, )
09: VAR_001415 (E26D, chain A, )
10: VAR_001416 (L32P, chain A, )
11: VAR_001417 (E33D, chain A, )
12: VAR_001418 (G35A, chain A, )
13: VAR_001419 (G35E, chain A, )
14: VAR_058551 (G35V, chain A, )
15: VAR_001420 (P48L, chain A, )
16: VAR_001421 (I49S, chain A, )
17: VAR_001422 (I49T, chain A, )
18: VAR_001423 (Q50R, chain A, )
19: VAR_001424 (M53I, chain A, )
20: VAR_001425 (S56I, chain A, )
21: VAR_001426 (A57V, chain A, )
22: VAR_053027 (R58Q, chain A, )
23: VAR_001427 (V59G, chain A, )
24: VAR_001428 (A60T, chain A, )
25: VAR_053028 (A60V, chain A, )
26: VAR_001430 (L62P, chain A, )
27: VAR_001431 (H66Y, chain A, )
28: VAR_058553 (G67R, chain A, )
29: VAR_001432 (A68L, chain A, )
30: VAR_001433 (A68T, chain A, )
31: VAR_001434 (A68V, chain A, )
32: VAR_058554 (E69G, chain A, )
33: VAR_001435 (E69K, chain A, )
34: VAR_001436 (E69V, chain A, )
35: VAR_001437 (N71K, chain A, )
36: VAR_001438 (N71S, chain A, )
37: VAR_001439 (C72G, chain A, )
38: VAR_001440 (D74N, chain A, )
39: VAR_001441 (D74V, chain A, )
40: VAR_058555 (D74Y, chain A, )
41: VAR_058556 (T77P, chain A, )
42: VAR_001442 (R80L, chain A, )
43: VAR_058557 (R80P, chain A, )
44: VAR_001443 (P81L, chain A, )
45: VAR_058558 (P81T, chain A, )
46: VAR_001445 (H83N, chain A, )
47: VAR_053029 (H83Q, chain A, )
48: VAR_001444 (H83Y, chain A, )
49: VAR_001446 (D84E, chain A, )
50: VAR_001447 (D84H, chain A, )
51: VAR_001448 (D84N, chain A, )
52: VAR_001449 (D84Y, chain A, )
53: VAR_001450 (A85T, chain A, )
54: VAR_001451 (R87P, chain A, )
55: VAR_012317 (R87W, chain A, )
56: VAR_001452 (E88D, chain A, )
57: VAR_001453 (G89D, chain A, )
58: VAR_001454 (G89S, chain A, )
59: VAR_001455 (T93A, chain A, )
60: VAR_023604 (L94Q, chain A, )
61: VAR_001456 (V95A, chain A, )
62: VAR_001457 (L97R, chain A, )
63: VAR_001458 (H98P, chain A, )
64: VAR_001459 (H98Q, chain A, )
65: VAR_001460 (R99P, chain A, )
66: VAR_001461 (R99Q, chain A, )
67: VAR_053030 (R99W, chain A, )
68: VAR_001462 (A100L, chain A, )
69: VAR_001463 (A100P, chain A, )
70: VAR_001464 (G101W, chain A, )
71: VAR_015818 (A102E, chain A, )
72: VAR_053031 (A102T, chain A, )
73: VAR_001466 (R107C, chain A, )
74: VAR_001467 (R107H, chain A, )
75: VAR_001469 (D108H, chain A, )
76: VAR_001468 (D108Y, chain A, )
77: VAR_001470 (P114L, chain A, )
78: VAR_058559 (P114S, chain A, )
79: VAR_001471 (L117M, chain A, )
80: VAR_001472 (A118T, chain A, )
81: VAR_001473 (E119Q, chain A, )
82: VAR_001474 (E120A, chain A, )
83: VAR_001475 (E120K, chain A, )
84: VAR_035069 (G122R, chain A, )
85: VAR_001476 (G122S, chain A, )
86: VAR_001477 (H123Q, chain A, )
87: VAR_053032 (R124C, chain A, )
88: VAR_001478 (R124H, chain A, )
89: VAR_001479 (V126D, chain A, )
90: VAR_001480 (A127S, chain A, )
91: VAR_001481 (A132P, chain A, )
92: VAR_001482 (A134V, chain A, )
93: VAR_001483 (H142Y, chain A, )
94: VAR_001484 (R144C, chain A, )
95: VAR_001486 (A148T, chain A, )
96: VAR_001487 (G150V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_001408
D
14
E
CDN2A_HUMAN
Unclassified
---
A
D
14
E
02
UniProt
VAR_001409
L
16
P
CDN2A_HUMAN
Unclassified
---
A
L
16
P
03
UniProt
VAR_001410
A
20
P
CDN2A_HUMAN
Unclassified
---
A
A
20
P
04
UniProt
VAR_001411
A
20
S
CDN2A_HUMAN
Unclassified
---
A
A
20
S
05
UniProt
VAR_001412
G
23
D
CDN2A_HUMAN
Unclassified
---
A
G
23
D
06
UniProt
VAR_001413
R
24
C
CDN2A_HUMAN
Disease (CMM2)
---
A
R
24
C
07
UniProt
VAR_001414
R
24
P
CDN2A_HUMAN
Disease (CMM2)
---
A
R
24
P
08
UniProt
VAR_058550
R
24
Q
CDN2A_HUMAN
Unclassified
---
A
R
24
Q
09
UniProt
VAR_001415
E
26
D
CDN2A_HUMAN
Unclassified
---
A
E
26
D
10
UniProt
VAR_001416
L
32
P
CDN2A_HUMAN
Disease (CMM2)
---
A
L
32
P
11
UniProt
VAR_001417
E
33
D
CDN2A_HUMAN
Unclassified
---
A
E
33
D
12
UniProt
VAR_001418
G
35
A
CDN2A_HUMAN
Disease (CMM2)
---
A
G
35
A
13
UniProt
VAR_001419
G
35
E
CDN2A_HUMAN
Disease (CMM2)
---
A
G
35
E
14
UniProt
VAR_058551
G
35
V
CDN2A_HUMAN
Disease (CMM2)
---
A
G
35
V
15
UniProt
VAR_001420
P
48
L
CDN2A_HUMAN
Disease (CMM2)
---
A
P
48
L
16
UniProt
VAR_001421
I
49
S
CDN2A_HUMAN
Unclassified
---
A
I
49
S
17
UniProt
VAR_001422
I
49
T
CDN2A_HUMAN
Polymorphism
---
A
I
49
T
18
UniProt
VAR_001423
Q
50
R
CDN2A_HUMAN
Disease (CMM2)
---
A
Q
50
R
19
UniProt
VAR_001424
M
53
I
CDN2A_HUMAN
Disease (CMM2)
---
A
M
53
I
20
UniProt
VAR_001425
S
56
I
CDN2A_HUMAN
Polymorphism
---
A
S
56
I
21
UniProt
VAR_001426
A
57
V
CDN2A_HUMAN
Unclassified
---
A
A
57
V
22
UniProt
VAR_053027
R
58
Q
CDN2A_HUMAN
Polymorphism
36204273
A
R
58
Q
23
UniProt
VAR_001427
V
59
G
CDN2A_HUMAN
Disease (CMM2)
---
A
V
59
G
24
UniProt
VAR_001428
A
60
T
CDN2A_HUMAN
Polymorphism
---
A
A
60
T
25
UniProt
VAR_053028
A
60
V
CDN2A_HUMAN
Unclassified
36204594
A
A
60
V
26
UniProt
VAR_001430
L
62
P
CDN2A_HUMAN
Disease (CMM2)
---
A
L
62
P
27
UniProt
VAR_001431
H
66
Y
CDN2A_HUMAN
Unclassified
---
A
H
66
Y
28
UniProt
VAR_058553
G
67
R
CDN2A_HUMAN
Disease (CMM2)
---
A
G
67
R
29
UniProt
VAR_001432
A
68
L
CDN2A_HUMAN
Disease (CMM2)
---
A
A
68
L
30
UniProt
VAR_001433
A
68
T
CDN2A_HUMAN
Unclassified
---
A
A
68
T
31
UniProt
VAR_001434
A
68
V
CDN2A_HUMAN
Polymorphism
---
A
A
68
V
32
UniProt
VAR_058554
E
69
G
CDN2A_HUMAN
Unclassified
---
A
E
69
G
33
UniProt
VAR_001435
E
69
K
CDN2A_HUMAN
Unclassified
---
A
E
69
K
34
UniProt
VAR_001436
E
69
V
CDN2A_HUMAN
Unclassified
---
A
E
69
V
35
UniProt
VAR_001437
N
71
K
CDN2A_HUMAN
Disease (CMM2)
---
A
N
71
K
36
UniProt
VAR_001438
N
71
S
CDN2A_HUMAN
Polymorphism
---
A
N
71
S
37
UniProt
VAR_001439
C
72
G
CDN2A_HUMAN
Unclassified
---
A
C
72
G
38
UniProt
VAR_001440
D
74
N
CDN2A_HUMAN
Unclassified
---
A
D
74
N
39
UniProt
VAR_001441
D
74
V
CDN2A_HUMAN
Unclassified
---
A
D
74
V
40
UniProt
VAR_058555
D
74
Y
CDN2A_HUMAN
Disease (CMM2)
---
A
D
74
Y
41
UniProt
VAR_058556
T
77
P
CDN2A_HUMAN
Disease (CMM2)
---
A
T
77
P
42
UniProt
VAR_001442
R
80
L
CDN2A_HUMAN
Unclassified
---
A
R
80
L
43
UniProt
VAR_058557
R
80
P
CDN2A_HUMAN
Disease (CMM2)
---
A
R
80
P
44
UniProt
VAR_001443
P
81
L
CDN2A_HUMAN
Unclassified
11552823
A
P
81
L
45
UniProt
VAR_058558
P
81
T
CDN2A_HUMAN
Disease (CMM2)
---
A
P
81
T
46
UniProt
VAR_001445
H
83
N
CDN2A_HUMAN
Unclassified
---
A
H
83
N
47
UniProt
VAR_053029
H
83
Q
CDN2A_HUMAN
Polymorphism
34968276
A
H
83
Q
48
UniProt
VAR_001444
H
83
Y
CDN2A_HUMAN
Unclassified
---
A
H
83
Y
49
UniProt
VAR_001446
D
84
E
CDN2A_HUMAN
Unclassified
---
A
D
84
E
50
UniProt
VAR_001447
D
84
H
CDN2A_HUMAN
Unclassified
---
A
D
84
H
51
UniProt
VAR_001448
D
84
N
CDN2A_HUMAN
Unclassified
---
A
D
84
N
52
UniProt
VAR_001449
D
84
Y
CDN2A_HUMAN
Disease (CMM2)
11552822
A
D
84
Y
53
UniProt
VAR_001450
A
85
T
CDN2A_HUMAN
Polymorphism
---
A
A
85
T
54
UniProt
VAR_001451
R
87
P
CDN2A_HUMAN
Disease (CMM2)
---
A
R
87
P
55
UniProt
VAR_012317
R
87
W
CDN2A_HUMAN
Disease (CMM2)
---
A
R
87
W
56
UniProt
VAR_001452
E
88
D
CDN2A_HUMAN
Unclassified
---
A
E
88
D
57
UniProt
VAR_001453
G
89
D
CDN2A_HUMAN
Disease (CMM2)
---
A
G
89
D
58
UniProt
VAR_001454
G
89
S
CDN2A_HUMAN
Disease (CMM2)
---
A
G
89
S
59
UniProt
VAR_001455
T
93
A
CDN2A_HUMAN
Unclassified
---
A
T
93
A
60
UniProt
VAR_023604
L
94
Q
CDN2A_HUMAN
Disease (CMM2)
---
A
L
94
Q
61
UniProt
VAR_001456
V
95
A
CDN2A_HUMAN
Unclassified
---
A
V
95
A
62
UniProt
VAR_001457
L
97
R
CDN2A_HUMAN
Disease (CMM2)
---
A
L
97
R
63
UniProt
VAR_001458
H
98
P
CDN2A_HUMAN
Disease (CMM2)
---
A
H
98
P
64
UniProt
VAR_001459
H
98
Q
CDN2A_HUMAN
Disease (CMM2)
---
A
H
98
Q
65
UniProt
VAR_001460
R
99
P
CDN2A_HUMAN
Disease (CMM2)
---
A
R
99
P
66
UniProt
VAR_001461
R
99
Q
CDN2A_HUMAN
Unclassified
---
A
R
99
Q
67
UniProt
VAR_053030
R
99
W
CDN2A_HUMAN
Polymorphism
34886500
A
R
99
W
68
UniProt
VAR_001462
A
100
L
CDN2A_HUMAN
Disease (CMM2)
---
A
A
100
L
69
UniProt
VAR_001463
A
100
P
CDN2A_HUMAN
Polymorphism
---
A
A
100
P
70
UniProt
VAR_001464
G
101
W
CDN2A_HUMAN
Disease (CMM2)
---
A
G
101
W
71
UniProt
VAR_015818
A
102
E
CDN2A_HUMAN
Disease (LFS)
---
A
A
102
E
72
UniProt
VAR_053031
A
102
T
CDN2A_HUMAN
Polymorphism
35741010
A
A
102
T
73
UniProt
VAR_001466
R
107
C
CDN2A_HUMAN
Disease (CMM2)
---
A
R
107
C
74
UniProt
VAR_001467
R
107
H
CDN2A_HUMAN
Polymorphism
---
A
R
107
H
75
UniProt
VAR_001469
D
108
H
CDN2A_HUMAN
Unclassified
---
A
D
108
H
76
UniProt
VAR_001468
D
108
Y
CDN2A_HUMAN
Unclassified
---
A
D
108
Y
77
UniProt
VAR_001470
P
114
L
CDN2A_HUMAN
Unclassified
---
A
P
114
L
78
UniProt
VAR_058559
P
114
S
CDN2A_HUMAN
Unclassified
---
A
P
114
S
79
UniProt
VAR_001471
L
117
M
CDN2A_HUMAN
Disease (CMM2)
---
A
L
117
M
80
UniProt
VAR_001472
A
118
T
CDN2A_HUMAN
Disease (CMM2)
---
A
A
118
T
81
UniProt
VAR_001473
E
119
Q
CDN2A_HUMAN
Unclassified
---
A
E
119
Q
82
UniProt
VAR_001474
E
120
A
CDN2A_HUMAN
Unclassified
---
A
E
120
A
83
UniProt
VAR_001475
E
120
K
CDN2A_HUMAN
Unclassified
---
A
E
120
K
84
UniProt
VAR_035069
G
122
R
CDN2A_HUMAN
Disease (CMM2)
---
A
G
122
R
85
UniProt
VAR_001476
G
122
S
CDN2A_HUMAN
Unclassified
---
A
G
122
S
86
UniProt
VAR_001477
H
123
Q
CDN2A_HUMAN
Unclassified
6413463
A
H
123
Q
87
UniProt
VAR_053032
R
124
C
CDN2A_HUMAN
Polymorphism
34170727
A
R
124
C
88
UniProt
VAR_001478
R
124
H
CDN2A_HUMAN
Unclassified
---
A
R
124
H
89
UniProt
VAR_001479
V
126
D
CDN2A_HUMAN
Disease (CMM2)
---
A
V
126
D
90
UniProt
VAR_001480
A
127
S
CDN2A_HUMAN
Unclassified
6413464
A
A
127
S
91
UniProt
VAR_001481
A
132
P
CDN2A_HUMAN
Unclassified
---
A
A
132
P
92
UniProt
VAR_001482
A
134
V
CDN2A_HUMAN
Unclassified
---
A
A
134
V
93
UniProt
VAR_001483
H
142
Y
CDN2A_HUMAN
Unclassified
---
A
H
142
Y
94
UniProt
VAR_001484
R
144
C
CDN2A_HUMAN
Unclassified
---
A
R
144
C
95
UniProt
VAR_001486
A
148
T
CDN2A_HUMAN
Polymorphism
3731249
A
A
148
T
96
UniProt
VAR_001487
G
150
V
CDN2A_HUMAN
Unclassified
---
A
G
150
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ANK_REP_REGION (A:16-130)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
CDN2A_HUMAN
16-130
1
A:16-130
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.5a (A:1-50)
Exon 1.6c (A:51-153)
Exon 1.10e (A:153-156)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.5a
2: Boundary 1.5a/1.6c
3: Boundary 1.6c/1.10e
4: Boundary 1.10e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000304494
5a
ENSE00001833804
chr9:
21975097-21974677
421
CDN2A_HUMAN
1-50
50
1
A:1-50
50
1.6c
ENST00000304494
6c
ENSE00001801793
chr9:
21971207-21970901
307
CDN2A_HUMAN
51-153
103
1
A:51-153
103
1.10e
ENST00000304494
10e
ENSE00001936961
chr9:
21968241-21967752
490
CDN2A_HUMAN
153-156
4
1
A:153-156
4
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SCOP Domains
(1, 1)
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1a: SCOP_d1dc2a_ (A:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Ankyrin repeat
(79)
Family
:
Ankyrin repeat
(60)
Protein domain
:
Cell cycle inhibitor p16ink4A
(5)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1dc2a_
A:
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CATH Domains
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1a: CATH_1dc2A00 (A:1-156)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Human (Homo sapiens)
(31)
1a
1dc2A00
A:1-156
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Asymmetric Unit 1
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