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1DAO
Biol. Unit 5
Info
Asym.Unit (457 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (118 KB)
Biol.Unit 3 (118 KB)
Biol.Unit 4 (118 KB)
Biol.Unit 5 (228 KB)
Biol.Unit 6 (228 KB)
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(1)
Title
:
COVALENT ADDUCT OF D-AMINO ACID OXIDASE FROM PIG KIDNEY WITH 3-METHYL-2-OXO-VALERIC ACID
Authors
:
F. Todone, A. Mattevi
Date
:
16 Jan 97 (Deposition) - 23 Jul 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: C,D,G,H (1x)
Biol. Unit 6: A,B,E,F (1x)
Keywords
:
Flavoenzyme, Fad Cofactor, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Todone, M. A. Vanoni, A. Mozzarelli, M. Bolognesi, A. Coda, B. Curti, A. Mattevi
Active Site Plasticity In D-Amino Acid Oxidase: A Crystallographic Analysis.
Biochemistry V. 36 5853 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABa)
1b: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABb)
1c: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABc)
1d: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABd)
1e: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABe)
1f: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABf)
1g: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABg)
1h: FLAVIN-ADENINE DINUCLEOTIDE-N5-ISO... (FABh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAB
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE-N5-ISOBUTYL KETONE
[
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]
Sites
(8, 8)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: FAC (UNKNOWN)
6: FAD (UNKNOWN)
7: FAG (UNKNOWN)
8: FAH (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY C:7 , ALA C:8 , GLY C:9 , VAL C:10 , ILE C:11 , ALA C:36 , ASP C:37 , ARG C:38 , THR C:43 , THR C:44 , THR C:45 , ALA C:48 , ALA C:49 , GLY C:50 , LEU C:51 , ARG C:162 , LYS C:163 , VAL C:164 , CYS C:181 , THR C:182 , TRP C:185 , TYR C:224 , TYR C:228 , ARG C:283 , HIS C:311 , GLY C:312 , GLY C:313 , TYR C:314 , GLY C:315 , LEU C:316 , THR C:317
BINDING SITE FOR RESIDUE FAB C 348
2
AC4
SOFTWARE
GLY D:7 , ALA D:8 , GLY D:9 , VAL D:10 , ILE D:11 , ALA D:36 , ASP D:37 , ARG D:38 , THR D:43 , THR D:44 , THR D:45 , ALA D:48 , ALA D:49 , GLY D:50 , LEU D:51 , ARG D:162 , VAL D:164 , CYS D:181 , THR D:182 , TRP D:185 , TYR D:224 , TYR D:228 , ARG D:283 , HIS D:311 , GLY D:312 , GLY D:313 , TYR D:314 , GLY D:315 , LEU D:316 , THR D:317
BINDING SITE FOR RESIDUE FAB D 348
3
AC7
SOFTWARE
GLY G:7 , ALA G:8 , GLY G:9 , VAL G:10 , ILE G:11 , ALA G:36 , ASP G:37 , ARG G:38 , THR G:43 , THR G:44 , THR G:45 , ALA G:48 , ALA G:49 , GLY G:50 , LEU G:51 , ARG G:162 , LYS G:163 , VAL G:164 , CYS G:181 , THR G:182 , TRP G:185 , TYR G:224 , TYR G:228 , ARG G:283 , HIS G:311 , GLY G:312 , GLY G:313 , TYR G:314 , GLY G:315 , LEU G:316 , THR G:317
BINDING SITE FOR RESIDUE FAB G 348
4
AC8
SOFTWARE
GLY H:7 , ALA H:8 , GLY H:9 , VAL H:10 , ILE H:11 , ALA H:36 , ASP H:37 , ARG H:38 , THR H:43 , THR H:44 , THR H:45 , ALA H:48 , ALA H:49 , GLY H:50 , LEU H:51 , ARG H:162 , VAL H:164 , CYS H:181 , THR H:182 , TRP H:185 , TYR H:224 , TYR H:228 , ARG H:283 , HIS H:311 , GLY H:312 , GLY H:313 , TYR H:314 , GLY H:315 , LEU H:316 , THR H:317
BINDING SITE FOR RESIDUE FAB H 348
5
FAC
UNKNOWN
FAB C:348
COVALENTLY BOUND COFACTOR.
6
FAD
UNKNOWN
FAB D:348
COVALENTLY BOUND COFACTOR.
7
FAG
UNKNOWN
FAB G:348
COVALENTLY BOUND COFACTOR.
8
FAH
UNKNOWN
FAB H:348
COVALENTLY BOUND COFACTOR.
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: DAO (C:305-323,D:305-323,G:305-323,H:30...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DAO
PS00677
D-amino acid oxidases signature.
OXDA_PIG
305-323
4
-
-
C:305-323
D:305-323
-
-
G:305-323
H:305-323
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1daoa2 (A:195-287)
1b: SCOP_d1daob2 (B:195-287)
1c: SCOP_d1daoc2 (C:195-287)
1d: SCOP_d1daod2 (D:195-287)
1e: SCOP_d1daoe2 (E:195-287)
1f: SCOP_d1daof2 (F:195-287)
1g: SCOP_d1daog2 (G:195-287)
1h: SCOP_d1daoh2 (H:195-287)
2a: SCOP_d1daoa1 (A:1-194,A:288-339)
2b: SCOP_d1daob1 (B:1-194,B:288-339)
2c: SCOP_d1daoc1 (C:1-194,C:288-339)
2d: SCOP_d1daod1 (D:1-194,D:288-339)
2e: SCOP_d1daoe1 (E:1-194,E:288-339)
2f: SCOP_d1daof1 (F:1-194,F:288-339)
2g: SCOP_d1daog1 (G:1-194,G:288-339)
2h: SCOP_d1daoh1 (H:1-194,H:288-339)
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)
(
)
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(
)
(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
D-aminoacid oxidase-like
(29)
Protein domain
:
D-aminoacid oxidase
(10)
Pig (Sus scrofa) [TaxId: 9823]
(6)
1a
d1daoa2
A:195-287
1b
d1daob2
B:195-287
1c
d1daoc2
C:195-287
1d
d1daod2
D:195-287
1e
d1daoe2
E:195-287
1f
d1daof2
F:195-287
1g
d1daog2
G:195-287
1h
d1daoh2
H:195-287
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-binding domain
(33)
Superfamily
:
Nucleotide-binding domain
(33)
Family
:
D-aminoacid oxidase, N-terminal domain
(10)
Protein domain
:
D-aminoacid oxidase, N-terminal domain
(10)
Pig (Sus scrofa) [TaxId: 9823]
(6)
2a
d1daoa1
A:1-194,A:288-339
2b
d1daob1
B:1-194,B:288-339
2c
d1daoc1
C:1-194,C:288-339
2d
d1daod1
D:1-194,D:288-339
2e
d1daoe1
E:1-194,E:288-339
2f
d1daof1
F:1-194,F:288-339
2g
d1daog1
G:1-194,G:288-339
2h
d1daoh1
H:1-194,H:288-339
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1daoA02 (A:89-139,A:196-285)
1b: CATH_1daoB02 (B:89-139,B:196-285)
1c: CATH_1daoC02 (C:89-139,C:196-285)
1d: CATH_1daoD02 (D:89-139,D:196-285)
1e: CATH_1daoE02 (E:89-139,E:196-285)
1f: CATH_1daoF02 (F:89-139,F:196-285)
1g: CATH_1daoG02 (G:89-139,G:196-285)
1h: CATH_1daoH02 (H:89-139,H:196-285)
2a: CATH_1daoA01 (A:1-88,A:140-195,A:286-339)
2b: CATH_1daoB01 (B:1-88,B:140-195,B:286-339)
2c: CATH_1daoC01 (C:1-88,C:140-195,C:286-339)
2d: CATH_1daoD01 (D:1-88,D:140-195,D:286-339)
2e: CATH_1daoE01 (E:1-88,E:140-195,E:286-339)
2f: CATH_1daoF01 (F:1-88,F:140-195,F:286-339)
2g: CATH_1daoG01 (G:1-88,G:140-195,G:286-339)
2h: CATH_1daoH01 (H:1-88,H:140-195,H:286-339)
View:
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)
(
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-Amino Acid Oxidase; Chain A, domain 2
(80)
Homologous Superfamily
:
D-Amino Acid Oxidase, subunit A, domain 2
(80)
Pig (Sus scrofa)
(6)
1a
1daoA02
A:89-139,A:196-285
1b
1daoB02
B:89-139,B:196-285
1c
1daoC02
C:89-139,C:196-285
1d
1daoD02
D:89-139,D:196-285
1e
1daoE02
E:89-139,E:196-285
1f
1daoF02
F:89-139,F:196-285
1g
1daoG02
G:89-139,G:196-285
1h
1daoH02
H:89-139,H:196-285
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Pig (Sus scrofa)
(21)
2a
1daoA01
A:1-88,A:140-195,A:286-339
2b
1daoB01
B:1-88,B:140-195,B:286-339
2c
1daoC01
C:1-88,C:140-195,C:286-339
2d
1daoD01
D:1-88,D:140-195,D:286-339
2e
1daoE01
E:1-88,E:140-195,E:286-339
2f
1daoF01
F:1-88,F:140-195,F:286-339
2g
1daoG01
G:1-88,G:140-195,G:286-339
2h
1daoH01
H:1-88,H:140-195,H:286-339
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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