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1D9K
Asym. Unit
Info
Asym.Unit (209 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (70 KB)
Biol.Unit 3 (40 KB)
Biol.Unit 4 (69 KB)
Biol.Unit 5 (103 KB)
Biol.Unit 6 (105 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF COMPLEX BETWEEN D10 TCR AND PMHC I-AK/CA
Authors
:
E. L. Reinherz, K. Tan, L. Tang, P. Kern, J. -H. Liu, Y. Xiong, R. E. Hussey A. Smolyar, B. Hare, R. Zhang, A. Joachimiak, H. -C. Chang, G. Wagner, J
Date
:
28 Oct 99 (Deposition) - 15 Dec 99 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,P,Q
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D,P (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H,Q (1x)
Biol. Unit 5: E,F,G,H,Q (1x)
Biol. Unit 6: A,B,C,D,P (1x)
Keywords
:
T-Cell Receptor, Mhc Class Ii, D10, I-Ak, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. L. Reinherz, K. Tan, L. Tang, P. Kern, J. Liu, Y. Xiong, R. E. Hussey, A. Smolyar, B. Hare, R. Zhang, A. Joachimiak, H. C. Chang, G. Wagner, J. Wang
The Crystal Structure Of A T Cell Receptor In Complex With Peptide And Mhc Class Ii.
Science V. 286 1913 1999
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
2b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
2c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
2d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
2e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
2f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
2g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
2h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
2i: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
9
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS C:75 , ASN C:78
BINDING SITE FOR RESIDUE NDG C 201
02
AC2
SOFTWARE
ASN C:118 , LYS C:164 , GLU C:166 , NDG C:212
BINDING SITE FOR RESIDUE NDG C 211
03
AC3
SOFTWARE
NDG C:211
BINDING SITE FOR RESIDUE NDG C 212
04
AC4
SOFTWARE
ASN D:19 , GLN D:22 , NDG D:202
BINDING SITE FOR RESIDUE NDG D 201
05
AC5
SOFTWARE
NDG D:201
BINDING SITE FOR RESIDUE NDG D 202
06
AC6
SOFTWARE
ASN G:78
BINDING SITE FOR RESIDUE NDG G 201
07
AC7
SOFTWARE
ASN G:118 , TRP G:168 , NDG G:212
BINDING SITE FOR RESIDUE NDG G 211
08
AC8
SOFTWARE
NDG G:211
BINDING SITE FOR RESIDUE NDG G 212
09
AC9
SOFTWARE
ASN H:19 , GLN H:22 , NDG H:202
BINDING SITE FOR RESIDUE NAG H 201
10
BC1
SOFTWARE
NAG H:201
BINDING SITE FOR RESIDUE NDG H 202
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TRFE_CHICK_003 (R135W, chain P/Q, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TRFE_CHICK_003
*
R
154
W
TRFE_CHICK
---
---
P/Q
R
135
W
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (C:161-167,G:161-167,D:171-177,H:17...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
HA2K_MOUSE
188-194
2
C:161-167
G:161-167
HB2K_MOUSE
197-203
2
D:171-177
H:171-177
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(6, 12)
Info
All SCOP Domains
1a: SCOP_d1d9kc1 (C:82-182)
1b: SCOP_d1d9kg1 (G:82-182)
2a: SCOP_d1d9kd1 (D:93-190)
2b: SCOP_d1d9kh1 (H:93-190)
3a: SCOP_d1d9ka_ (A:)
3b: SCOP_d1d9ke_ (E:)
4a: SCOP_d1d9kb_ (B:)
4b: SCOP_d1d9kf_ (F:)
5a: SCOP_d1d9kc2 (C:1-81)
5b: SCOP_d1d9kg2 (G:1-81)
6a: SCOP_d1d9kd2 (D:2-92)
6b: SCOP_d1d9kh2 (H:2-92)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Class II MHC alpha chain, C-terminal domain
(75)
Mouse (Mus musculus), I-A group [TaxId: 10090]
(24)
1a
d1d9kc1
C:82-182
1b
d1d9kg1
G:82-182
Protein domain
:
Class II MHC beta chain, C-terminal domain
(70)
Mouse (Mus musculus), I-A group [TaxId: 10090]
(16)
2a
d1d9kd1
D:93-190
2b
d1d9kh1
H:93-190
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
T-cell antigen receptor
(105)
Mouse (Mus musculus), alpha-chain [TaxId: 10090]
(21)
3a
d1d9ka_
A:
3b
d1d9ke_
E:
Mouse (Mus musculus), beta-chain [TaxId: 10090]
(28)
4a
d1d9kb_
B:
4b
d1d9kf_
F:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class II MHC alpha chain, N-terminal domain
(75)
Mouse (Mus musculus), I-AK [TaxId: 10090]
(4)
5a
d1d9kc2
C:1-81
5b
d1d9kg2
G:1-81
Protein domain
:
Class II MHC beta chain, N-terminal domain
(70)
Mouse (Mus musculus), I-AK [TaxId: 10090]
(3)
6a
d1d9kd2
D:2-92
6b
d1d9kh2
H:2-92
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1d9kD01 (D:2-92)
1b: CATH_1d9kH01 (H:2-92)
1c: CATH_1d9kC01 (C:3-81)
1d: CATH_1d9kG01 (G:3-81)
2a: CATH_1d9kB00 (B:3-116C)
2b: CATH_1d9kF00 (F:3-116C)
2c: CATH_1d9kC02 (C:82-181)
2d: CATH_1d9kG02 (G:82-181)
2e: CATH_1d9kD02 (D:93-190)
2f: CATH_1d9kH02 (H:93-190)
2g: CATH_1d9kA00 (A:2-117)
2h: CATH_1d9kE00 (E:2-117)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
Homologous Superfamily
:
Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1
(75)
House mouse (Mus musculus)
(25)
1a
1d9kD01
D:2-92
1b
1d9kH01
H:2-92
1c
1d9kC01
C:3-81
1d
1d9kG01
G:3-81
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1d9kB00
B:3-116C
2b
1d9kF00
F:3-116C
2c
1d9kC02
C:82-181
2d
1d9kG02
G:82-181
2e
1d9kD02
D:93-190
2f
1d9kH02
H:93-190
2g
1d9kA00
A:2-117
2h
1d9kE00
E:2-117
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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