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1D8T
Biol. Unit 1
Info
Asym.Unit (147 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ELONGATION FACTOR, TU (EF-TU-MGGDP) COMPLEXED WITH GE2270A, A THIAZOLYL PEPTIDE ANTIBIOTIC
Authors
:
S. E. Heffron, F. Jurnak
Date
:
25 Oct 99 (Deposition) - 25 Oct 00 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Hydrolase-Antibiotic Complex, Thiopeptide, Antibiotic, Antibacterial, Thiazole, Oxazole, Hydrolase, Gtpase, Translation Elongation Factor, Protein Synthesis, Nucleotide-Binding, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. E. Heffron, F. Jurnak
Structure Of An Ef-Tu Complex With A Thiazolyl Peptide Antibiotic Determined At 2. 35 A Resolution: Atomic Basis Fo Ge2270A Inhibition Of Ef-Tu.
Biochemistry V. 39 37 2000
[
close entry info
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Hetero Components
(9, 30)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1aa: ACETATE ION (ACTaa)
1ab: ACETATE ION (ACTab)
1ac: ACETATE ION (ACTac)
1ad: ACETATE ION (ACTad)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
1n: ACETATE ION (ACTn)
1o: ACETATE ION (ACTo)
1p: ACETATE ION (ACTp)
1q: ACETATE ION (ACTq)
1r: ACETATE ION (ACTr)
1s: ACETATE ION (ACTs)
1t: ACETATE ION (ACTt)
1u: ACETATE ION (ACTu)
1v: ACETATE ION (ACTv)
1w: ACETATE ION (ACTw)
1x: ACETATE ION (ACTx)
1y: ACETATE ION (ACTy)
1z: ACETATE ION (ACTz)
2a: (2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC... (BB6a)
2b: (2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC... (BB6b)
3a: (2Z)-2-AMINO-4-METHOXY-3-SULFANYLB... (BB7a)
3b: (2Z)-2-AMINO-4-METHOXY-3-SULFANYLB... (BB7b)
4a: (2S,3S)-BETA-HYDROXY-PHENYLALANINE (BB8a)
4b: (2S,3S)-BETA-HYDROXY-PHENYLALANINE (BB8b)
5a: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9a)
5b: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9b)
5c: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9c)
5d: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9d)
5e: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9e)
5f: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9f)
5g: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9g)
5h: (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOI... (BB9h)
6a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
6b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
7a: N-METHYL ASPARAGINE (MENa)
7b: N-METHYL ASPARAGINE (MENb)
8a: MAGNESIUM ION (MGa)
8b: MAGNESIUM ION (MGb)
9a: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6a)
9b: 3-HYDROXY-2-IMINOPROPANOIC ACID (MH6b)
10a: AMINO GROUP (NH2a)
10b: AMINO GROUP (NH2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
19
Ligand/Ion
ACETATE ION
2
BB6
1
Mod. Amino Acid
(2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID
3
BB7
1
Mod. Amino Acid
(2Z)-2-AMINO-4-METHOXY-3-SULFANYLBUT-2-ENOIC ACID
4
BB8
1
Mod. Amino Acid
(2S,3S)-BETA-HYDROXY-PHENYLALANINE
5
BB9
4
Mod. Amino Acid
(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
6
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
7
MEN
1
Mod. Amino Acid
N-METHYL ASPARAGINE
8
MG
-1
Ligand/Ion
MAGNESIUM ION
9
MH6
1
Mod. Amino Acid
3-HYDROXY-2-IMINOPROPANOIC ACID
10
NH2
1
Mod. Amino Acid
AMINO GROUP
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC8 (SOFTWARE)
23: CC9 (SOFTWARE)
24: DC8 (SOFTWARE)
25: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:25 , GDP A:999 , HOH A:2018 , HOH A:2063 , HOH A:2064 , HOH A:2218
BINDING SITE FOR RESIDUE MG A 998
02
AC2
SOFTWARE
ASP A:21 , HIS A:22 , GLY A:23 , LYS A:24 , THR A:25 , THR A:26 , PHE A:46 , ASN A:135 , LYS A:136 , ASP A:138 , MET A:139 , SER A:173 , ALA A:174 , LEU A:175 , MG A:998 , HOH A:2017 , HOH A:2063 , HOH A:2064 , HOH A:2217 , HOH A:2218 , HOH A:2219
BINDING SITE FOR RESIDUE GDP A 999
03
AC3
SOFTWARE
THR A:167 , PRO A:168 , ILE A:169 , HOH A:2115 , ACT A:3019
BINDING SITE FOR RESIDUE ACT A 3002
04
AC4
SOFTWARE
ARG A:123 , ASP A:370 , ALA A:389
BINDING SITE FOR RESIDUE ACT A 3003
05
AC5
SOFTWARE
ARG A:154 , ASP A:165 , SER A:221 , ACT A:3028
BINDING SITE FOR RESIDUE ACT A 3004
06
AC6
SOFTWARE
GLU A:152 , GLU A:155 , GLN A:159 , HOH A:2221
BINDING SITE FOR RESIDUE ACT A 3005
07
AC7
SOFTWARE
THR A:302 , LEU A:362 , ILE A:363 , HOH A:2172
BINDING SITE FOR RESIDUE ACT A 3006
08
AC8
SOFTWARE
VAL A:127 , ARG A:373
BINDING SITE FOR RESIDUE ACT A 3007
09
AC9
SOFTWARE
PRO A:113 , HOH A:2221 , HOH A:2222 , ACT B:3009
BINDING SITE FOR RESIDUE ACT A 3010
10
BC1
SOFTWARE
ARG A:171 , TRP A:184 , HOH A:2223 , ACT A:3023
BINDING SITE FOR RESIDUE ACT A 3013
11
BC2
SOFTWARE
ILE A:247 , GLU A:287
BINDING SITE FOR RESIDUE ACT A 3016
12
BC3
SOFTWARE
VAL A:391 , LEU A:392
BINDING SITE FOR RESIDUE ACT A 3017
13
BC4
SOFTWARE
ILE A:169 , VAL A:170 , ARG A:171 , LYS A:187 , GLU A:190 , ACT A:3002
BINDING SITE FOR RESIDUE ACT A 3019
14
BC5
SOFTWARE
GLU A:6 , GLY A:94 , ALA A:95
BINDING SITE FOR RESIDUE ACT A 3020
15
BC6
SOFTWARE
ASP A:50 , PRO A:82 , HOH A:2017
BINDING SITE FOR RESIDUE ACT A 3021
16
BC7
SOFTWARE
SER A:65 , HIS A:66
BINDING SITE FOR RESIDUE ACT A 3022
17
BC8
SOFTWARE
VAL A:140 , ASP A:141 , ASP A:142 , GLU A:143 , LEU A:146 , ACT A:3013 , BB9 C:2
BINDING SITE FOR RESIDUE ACT A 3023
18
BC9
SOFTWARE
TYR A:129 , TYR A:198 , HOH A:2226 , HOH A:2227
BINDING SITE FOR RESIDUE ACT A 3025
19
CC1
SOFTWARE
HIS A:84 , ASN A:355
BINDING SITE FOR RESIDUE ACT A 3026
20
CC2
SOFTWARE
ILE A:220 , SER A:221 , ACT A:3004
BINDING SITE FOR RESIDUE ACT A 3028
21
CC3
SOFTWARE
TYR A:39 , LEU A:189 , ALA A:192 , ASP A:196
BINDING SITE FOR RESIDUE ACT A 3030
22
CC8
SOFTWARE
PRO A:111 , ACT A:3010 , ARG B:318 , HIS B:319 , THR B:320 , GLU B:378
BINDING SITE FOR RESIDUE ACT B 3009
23
CC9
SOFTWARE
PHE A:323 , GLU A:348 , VAL B:140 , ASP B:141 , ASP B:142
BINDING SITE FOR RESIDUE ACT B 3011
24
DC8
SOFTWARE
GLY A:222 , PRO C:14
BINDING SITE FOR RESIDUE NH2 C 15
25
EC1
SOFTWARE
THR A:73 , GLU A:143 , ALA A:182 , GLU A:215 , ASP A:216 , GLY A:222 , ARG A:223 , VAL A:226 , THR A:228 , GLY A:229 , ARG A:230 , THR A:256 , GLY A:257 , VAL A:258 , GLU A:259 , PHE A:261 , ARG A:262 , ASN A:273 , VAL A:274 , GLY A:275 , LEU A:277 , HOH A:2024 , HOH A:2161 , ACT A:3023 , NH2 C:15 , HOH C:2002 , HOH C:2003
BINDING SITE FOR CHAIN C OF THIOCILIN GE2270
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (A:50-65)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EFTU1_ECOLI
51-66
1
A:50-65
-
EFTU2_ECOLI
51-66
1
A:50-65
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1d8ta2 (A:297-393)
1b: SCOP_d1d8tb2 (B:297-393)
2a: SCOP_d1d8ta1 (A:205-296)
2b: SCOP_d1d8tb1 (B:205-296)
3a: SCOP_d1d8ta3 (A:3-204)
3b: SCOP_d1d8tb3 (B:9-204)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor Tu (EF-Tu)
(17)
Escherichia coli [TaxId: 562]
(7)
1a
d1d8ta2
A:297-393
1b
d1d8tb2
B:297-393
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor Tu (EF-Tu), domain 2
(17)
Escherichia coli [TaxId: 562]
(7)
2a
d1d8ta1
A:205-296
2b
d1d8tb1
B:205-296
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor Tu (EF-Tu), N-terminal (G) domain
(19)
Escherichia coli [TaxId: 562]
(9)
3a
d1d8ta3
A:3-204
3b
d1d8tb3
B:9-204
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1d8tA01 (A:9-202)
1b: CATH_1d8tB01 (B:9-202)
2a: CATH_1d8tB03 (B:299-392)
2b: CATH_1d8tA03 (A:300-392)
2c: CATH_1d8tA02 (A:205-299)
2d: CATH_1d8tB02 (B:205-298)
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Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Escherichia coli. Organism_taxid: 562
(6)
1a
1d8tA01
A:9-202
1b
1d8tB01
B:9-202
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Escherichia coli. Organism_taxid: 562
(2)
2a
1d8tB03
B:299-392
2b
1d8tA03
A:300-392
2c
1d8tA02
A:205-299
2d
1d8tB02
B:205-298
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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