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1D8D
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
CO-CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE SUBSTRATE AND FPP ANALOG AT 2.0A RESOLUTION
Authors
:
S. B. Long, P. J. Casey, L. S. Beese
Date
:
22 Oct 99 (Deposition) - 09 Feb 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,P
Biol. Unit 1: A,B,P (1x)
Keywords
:
Ftase, Pft, Pftase, Farnesyltransferase, Farnesyl Transferase, Caax, Ras, Cancer
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. B. Long, P. J. Casey, L. S. Beese
The Basis For K-Ras4B Binding Specificity To Protein Farnesyltransferase Revealed By 2 A Resolution Ternary Complex Structures.
Structure Fold. Des. V. 8 209 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: [(3,7,11-TRIMETHYL-DODECA-2,6,10-T... (FIIa)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
FII
1
Ligand/Ion
[(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)-METHYL]-PHOSPHONIC ACID
3
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR B:93 , CYS B:95 , LEU B:96 , ASP B:359 , LYS P:3 , LYS P:7 , HOH P:1166 , HOH P:1330 , ACT P:3001
BINDING SITE FOR RESIDUE ACT P 3000
2
AC2
SOFTWARE
LEU B:96 , TYR B:361 , LYS P:3 , CYS P:8 , HOH P:1246 , HOH P:1318 , ACT P:3000
BINDING SITE FOR RESIDUE ACT P 3001
3
AC3
SOFTWARE
LEU B:89 , THR B:90 , TYR B:93 , HOH B:1183 , HOH B:1449 , ACT B:3003
BINDING SITE FOR RESIDUE ACT B 3002
4
AC4
SOFTWARE
TYR B:81 , TYR B:93 , ARG B:358 , ASP B:359 , HOH B:1449 , ACT B:3002
BINDING SITE FOR RESIDUE ACT B 3003
5
AC5
SOFTWARE
ASP B:297 , CYS B:299 , HIS B:362 , CYS P:8
BINDING SITE FOR RESIDUE ZN A 1001
6
AC6
SOFTWARE
LYS A:164 , TYR A:166 , HIS B:248 , GLY B:250 , CYS B:254 , ARG B:291 , LYS B:294 , TYR B:300 , TRP B:303 , HOH B:1162 , HOH B:1164 , HOH B:1165 , HOH B:1168 , HOH B:1198 , HOH B:1253 , ILE P:10
BINDING SITE FOR RESIDUE FII B 1000
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: PFTA (A:112-146|A:147-181|A:215-249|A:18...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFTA
PS51147
Protein prenyltransferases alpha subunit repeat profile.
FNTA_RAT
112-146
147-181
215-249
182-214
255-289
5
A:112-146
A:147-181
A:215-249
A:182-214
A:255-289
[
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Exons
(13, 13)
Info
All Exons
Exon 1.1 (B:17-48)
Exon 1.2 (B:49-70)
Exon 1.3 (B:70-94)
Exon 1.4 (B:95-125)
Exon 1.5 (B:125-174)
Exon 1.6 (B:174-202)
Exon 1.7 (B:202-231)
Exon 1.8 (B:231-274)
Exon 1.9 (B:275-319)
Exon 1.10 (B:319-356)
Exon 1.11 (B:356-394)
Exon 1.12 (B:395-423)
Exon 2.5b (P:1-11 (gaps))
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/-
14: Boundary 2.4/2.5b
15: Boundary 2.5b/2.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000010588
1
ENSRNOE00000071243
chr6:
99427967-99428155
189
FNTB_RAT
1-48
48
1
B:17-48
32
1.2
ENSRNOT00000010588
2
ENSRNOE00000071421
chr6:
99447593-99447657
65
FNTB_RAT
49-70
22
1
B:49-70
22
1.3
ENSRNOT00000010588
3
ENSRNOE00000071602
chr6:
99457445-99457517
73
FNTB_RAT
70-94
25
1
B:70-94
25
1.4
ENSRNOT00000010588
4
ENSRNOE00000071771
chr6:
99459109-99459200
92
FNTB_RAT
95-125
31
1
B:95-125
31
1.5
ENSRNOT00000010588
5
ENSRNOE00000071976
chr6:
99471356-99471502
147
FNTB_RAT
125-174
50
1
B:125-174
50
1.6
ENSRNOT00000010588
6
ENSRNOE00000072148
chr6:
99471595-99471678
84
FNTB_RAT
174-202
29
1
B:174-202
29
1.7
ENSRNOT00000010588
7
ENSRNOE00000072321
chr6:
99480586-99480672
87
FNTB_RAT
202-231
30
1
B:202-231
30
1.8
ENSRNOT00000010588
8
ENSRNOE00000072507
chr6:
99489459-99489588
130
FNTB_RAT
231-274
44
1
B:231-274
44
1.9
ENSRNOT00000010588
9
ENSRNOE00000072695
chr6:
99492633-99492765
133
FNTB_RAT
275-319
45
1
B:275-319
45
1.10
ENSRNOT00000010588
10
ENSRNOE00000072879
chr6:
99504658-99504769
112
FNTB_RAT
319-356
38
1
B:319-356
38
1.11
ENSRNOT00000010588
11
ENSRNOE00000073070
chr6:
99505820-99505934
115
FNTB_RAT
356-394
39
1
B:356-394
39
1.12
ENSRNOT00000010588
12
ENSRNOE00000238940
chr6:
99510015-99511373
1359
FNTB_RAT
395-437
43
1
B:395-423
29
2.1
ENST00000256078
1
ENSE00001189804
chr12:
25403854-25403685
170
RASK_HUMAN
-
0
0
-
-
2.2a
ENST00000256078
2a
ENSE00000936617
chr12:
25398329-25398208
122
RASK_HUMAN
1-37
37
0
-
-
2.3
ENST00000256078
3
ENSE00001719809
chr12:
25380346-25380168
179
RASK_HUMAN
38-97
60
0
-
-
2.4
ENST00000256078
4
ENSE00001644818
chr12:
25378707-25378548
160
RASK_HUMAN
97-150
54
0
-
-
2.5b
ENST00000256078
5b
ENSE00001189807
chr12:
25368494-25368371
124
RASK_HUMAN
151-189
39
1
P:1-11 (gaps)
21
2.6b
ENST00000256078
6b
ENSE00001740851
chr12:
25362845-25358182
4664
RASK_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1d8da_ (A:)
2a: SCOP_d1d8db_ (B:)
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Classes
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)
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Folds
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(
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Superfamilies
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Protein prenylyltransferase
(68)
Family
:
Protein prenylyltransferase
(68)
Protein domain
:
Protein farnesyltransferase alpha-subunit
(64)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(51)
1a
d1d8da_
A:
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
Protein prenyltransferases
(86)
Protein domain
:
Protein farnesyltransferase, beta-subunit
(63)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(50)
2a
d1d8db_
B:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1d8dA00 (A:55-377)
2a: CATH_1d8dB00 (B:17-423)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.120, no name defined]
(62)
Norway rat (Rattus norvegicus)
(37)
1a
1d8dA00
A:55-377
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.20, no name defined]
(105)
Norway rat (Rattus norvegicus)
(39)
2a
1d8dB00
B:17-423
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein & NOT PROSITE
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Chain P
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