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1D7K
Asym. Unit
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Asym.Unit (144 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 ANGSTROMS RESOLUTION
Authors
:
J. J. Almrud, M. A. Oliveira, A. D. Kern, N. V. Grishin, M. A. Phillips, M. L. Hackert
Date
:
18 Oct 99 (Deposition) - 25 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Beta Barrel, Pyridoxal 5'-Phosphate, Sheet-Domain, Decarboxylation, Ornithine, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Almrud, M. A. Oliveira, A. D. Kern, N. V. Grishin, M. A. Phillips, M. L. Hackert
Crystal Structure Of Human Ornithine Decarboxylase At 2. 1 A Resolution: Structural Insights To Antizyme Binding.
J. Mol. Biol. V. 295 7 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
1b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
LLP
2
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ODR_DC_2_1 (A:66-84,B:66-84)
2: ODR_DC_2_2 (A:222-239,B:222-239)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ODR_DC_2_1
PS00878
Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
DCOR_HUMAN
66-84
2
A:66-84
B:66-84
2
ODR_DC_2_2
PS00879
Orn/DAP/Arg decarboxylases family 2 signature 2.
DCOR_HUMAN
222-239
2
A:222-239
B:222-239
[
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Exons
(10, 20)
Info
All Exons
Exon 1.4 (A:7-34 | B:7-34)
Exon 1.5b (A:35-92 | B:35-92)
Exon 1.6 (A:93-150 | B:93-150)
Exon 1.7 (A:150-195 | B:150-195)
Exon 1.8 (A:195-222 | B:195-222)
Exon 1.9 (A:223-250 | B:223-250)
Exon 1.10 (A:251-301 | B:251-300)
Exon 1.11 (A:311-342 | B:309-342)
Exon 1.12 (A:343-414 | B:343-414)
Exon 1.13b (A:414-427 | B:414-421)
View:
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5b
03: Boundary 1.5b/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13b
11: Boundary 1.13b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000234111
1a
ENSE00001349715
chr2:
10588630-10588247
384
DCOR_HUMAN
-
0
0
-
-
1.3
ENST00000234111
3
ENSE00001349711
chr2:
10585390-10585281
110
DCOR_HUMAN
-
0
0
-
-
1.4
ENST00000234111
4
ENSE00002192373
chr2:
10585175-10585057
119
DCOR_HUMAN
1-34
34
2
A:7-34
B:7-34
28
28
1.5b
ENST00000234111
5b
ENSE00000710607
chr2:
10584773-10584600
174
DCOR_HUMAN
35-92
58
2
A:35-92
B:35-92
58
58
1.6
ENST00000234111
6
ENSE00001687557
chr2:
10584393-10584221
173
DCOR_HUMAN
93-150
58
2
A:93-150
B:93-150
58
58
1.7
ENST00000234111
7
ENSE00000710605
chr2:
10583962-10583828
135
DCOR_HUMAN
150-195
46
2
A:150-195
B:150-195
46
46
1.8
ENST00000234111
8
ENSE00000710603
chr2:
10583697-10583616
82
DCOR_HUMAN
195-222
28
2
A:195-222
B:195-222
28
28
1.9
ENST00000234111
9
ENSE00000710602
chr2:
10583439-10583356
84
DCOR_HUMAN
223-250
28
2
A:223-250
B:223-250
28
28
1.10
ENST00000234111
10
ENSE00000710601
chr2:
10582300-10582138
163
DCOR_HUMAN
251-305
55
2
A:251-301
B:251-300
51
50
1.11
ENST00000234111
11
ENSE00000710600
chr2:
10582055-10581943
113
DCOR_HUMAN
305-342
38
2
A:311-342
B:309-342
32
34
1.12
ENST00000234111
12
ENSE00000710599
chr2:
10581849-10581635
215
DCOR_HUMAN
343-414
72
2
A:343-414
B:343-414
72
72
1.13b
ENST00000234111
13b
ENSE00001001268
chr2:
10580994-10580094
901
DCOR_HUMAN
414-461
48
2
A:414-427
B:414-421
14
8
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1d7ka1 (A:7-43,A:284-427)
1b: SCOP_d1d7kb1 (B:7-43,B:284-421)
2a: SCOP_d1d7ka2 (A:44-283)
2b: SCOP_d1d7kb2 (B:44-283)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Domain of alpha and beta subunits of F1 ATP synthase-like
(89)
Superfamily
:
Alanine racemase C-terminal domain-like
(25)
Family
:
Eukaryotic ODC-like
(13)
Protein domain
:
Eukaryotic ornithine decarboxylase (ODC)
(7)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1d7ka1
A:7-43,A:284-427
1b
d1d7kb1
B:7-43,B:284-421
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
PLP-binding barrel
(27)
Family
:
Alanine racemase-like, N-terminal domain
(25)
Protein domain
:
Eukaryotic ornithine decarboxylase
(7)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1d7ka2
A:44-283
2b
d1d7kb2
B:44-283
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1d7kA02 (A:46-279)
1b: CATH_1d7kB02 (B:46-279)
2a: CATH_1d7kB01 (B:35-45,B:280-409)
2b: CATH_1d7kA01 (A:35-45,A:280-409)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Alanine racemase
(53)
Human (Homo sapiens)
(3)
1a
1d7kA02
A:46-279
1b
1d7kB02
B:46-279
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lyase, Ornithine Decarboxylase; Chain A, domain 1
(47)
Homologous Superfamily
:
Lyase, Ornithine Decarboxylase; Chain A, domain 1
(47)
Human (Homo sapiens)
(3)
2a
1d7kB01
B:35-45,B:280-409
2b
1d7kA01
A:35-45,A:280-409
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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