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1D7I
Asym. Unit
Info
Asym.Unit (41 KB)
Biol.Unit 1 (20 KB)
Biol.Unit 2 (20 KB)
Biol.Unit 3 (38 KB)
Biol.Unit 4 (37 KB)
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(1)
Title
:
FKBP COMPLEXED WITH METHYL METHYLSULFINYLMETHYL SULFIDE (DSS)
Authors
:
P. Burkhard, P. Taylor, M. D. Walkinshaw
Date
:
18 Oct 99 (Deposition) - 21 Oct 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A (2x)
Biol. Unit 4: B (2x)
Keywords
:
Isomerase, Immunophilin, Fkbp, Methyl Methylsulfinylmethyl Sulfide, Dss
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Burkhard, P. Taylor, M. D. Walkinshaw
X-Ray Structures Of Small Ligand-Fkbp Complexes Provide An Estimate For Hydrophobic Interaction Energies.
J. Mol. Biol. V. 295 953 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: METHYL METHYLSULFINYLMETHYL SULFID... (DSSa)
1b: METHYL METHYLSULFINYLMETHYL SULFID... (DSSb)
2a: AMMONIUM ION (NH4a)
2b: AMMONIUM ION (NH4b)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DSS
2
Ligand/Ion
METHYL METHYLSULFINYLMETHYL SULFIDE
2
NH4
2
Ligand/Ion
AMMONIUM ION
3
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: BPA (AUTHOR)
8: BPB (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:82 , THR A:85 , GLY A:86
BINDING SITE FOR RESIDUE NH4 A 401
2
AC2
SOFTWARE
TYR B:82 , THR B:85 , GLY B:86
BINDING SITE FOR RESIDUE NH4 B 402
3
AC3
SOFTWARE
GLY A:83 , ALA A:84 , THR A:85 , HOH A:433
BINDING SITE FOR RESIDUE SO4 A 403
4
AC4
SOFTWARE
GLY B:83 , ALA B:84 , THR B:85 , HOH B:429
BINDING SITE FOR RESIDUE SO4 B 404
5
AC5
SOFTWARE
TYR A:26 , PHE A:46 , VAL A:55 , ILE A:56 , TYR A:82 , HOH A:450 , HOH A:451 , HOH A:452
BINDING SITE FOR RESIDUE DSS A 301
6
AC6
SOFTWARE
TYR B:26 , PHE B:46 , VAL B:55 , ILE B:56 , TYR B:82 , PHE B:99 , HOH B:459 , HOH B:460 , HOH B:461
BINDING SITE FOR RESIDUE DSS B 302
7
BPA
AUTHOR
TYR A:26 , PHE A:46 , VAL A:55 , ILE A:56
NULL
8
BPB
AUTHOR
TYR B:26 , PHE B:46 , VAL B:55 , ILE B:56
NULL
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FKBP_PPIASE (A:19-107,B:19-107)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FKBP_PPIASE
PS50059
FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.
FKB1A_HUMAN
20-108
2
A:19-107
B:19-107
[
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Exons
(4, 8)
Info
All Exons
Exon 1.1a (A:1-12 | B:1-12)
Exon 1.1f (A:12-28 | B:12-28)
Exon 1.4 (A:28-65 | B:28-65)
Exon 1.5a (A:66-107 | B:66-107)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.1f
3: Boundary 1.1f/1.4
4: Boundary 1.4/1.5a
5: Boundary 1.5a/1.7f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000400137
1a
ENSE00001561754
chr20:
1373806-1373606
201
FKB1A_HUMAN
1-13
13
2
A:1-12
B:1-12
12
12
1.1f
ENST00000400137
1f
ENSE00001107838
chr20:
1373525-1373478
48
FKB1A_HUMAN
13-29
17
2
A:12-28
B:12-28
17
17
1.4
ENST00000400137
4
ENSE00000858591
chr20:
1356247-1356135
113
FKB1A_HUMAN
29-66
38
2
A:28-65
B:28-65
38
38
1.5a
ENST00000400137
5a
ENSE00000858590
chr20:
1352884-1352720
165
FKB1A_HUMAN
67-108
42
2
A:66-107
B:66-107
42
42
1.7f
ENST00000400137
7f
ENSE00001872186
chr20:
1350716-1349622
1095
FKB1A_HUMAN
-
0
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1d7ia_ (A:)
1b: SCOP_d1d7ib_ (B:)
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)
(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
FKBP-like
(198)
Family
:
FKBP immunophilin/proline isomerase
(153)
Protein domain
:
FK-506 binding protein (FKBP12), an immunophilin
(44)
Human (Homo sapiens) [TaxId: 9606]
(42)
1a
d1d7ia_
A:
1b
d1d7ib_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1d7iA00 (A:1-107)
1b: CATH_1d7iB00 (B:1-107)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.40, no name defined]
(98)
Human (Homo sapiens)
(72)
1a
1d7iA00
A:1-107
1b
1d7iB00
B:1-107
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (41 KB)
Header - Asym.Unit
Biol.Unit 1 (20 KB)
Header - Biol.Unit 1
Biol.Unit 2 (20 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
Biol.Unit 4 (37 KB)
Header - Biol.Unit 4
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