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1D7G
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Theoretical Model (51 KB)
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(1)
Title
:
A MODEL FOR THE COMPLEX BETWEEN THE HYPOXIA-INDUCIBLE FACTOR-1 (HIF-1) AND ITS CONSENSUS DNA SEQUENCE
Authors
:
G. Michel, E. Minet, F. Durant, J. Remacle, C. Michiels
Date
:
18 Oct 99 (Deposition) - 22 Oct 99 (Release) - 04 Apr 01 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C,D
Keywords
:
Transcription Factor, Basic Helix Loop Helix, Complex (Transcription Factor/Dna)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Michel, E. Minet, I. Ernest, I. Roland, F. Durant, J. Remacle, C. Michiels
A Model For The Complex Between The Hypoxia-Inducible Factor-1 (Hif-1) And Its Consensus Dna Sequence.
J. Biomol. Struct. Dyn. V. 18 169 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BHLH (D:3-56,C:3-56)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BHLH
PS50888
Myc-type, basic helix-loop-helix (bHLH) domain profile.
HIF1A_HUMAN
17-70
1
D:3-56
ARNT_HUMAN
89-142
1
C:3-56
[
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Exons
(3, 3)
Info
All Exons
Exon 1.2b (D:1-59)
Exon 2.7 (C:1-5)
Exon 2.8b (C:5-59)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 2.6/2.7
4: Boundary 2.7/2.8b
5: Boundary 2.8b/2.9c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000337138
1a
ENSE00001520256
chr14:
62162258-62162557
300
HIF1A_HUMAN
1-12
12
0
-
-
1.2b
ENST00000337138
2b
ENSE00000867524
chr14:
62187100-62187290
191
HIF1A_HUMAN
12-76
65
1
D:1-59
59
1.3
ENST00000337138
3
ENSE00000658281
chr14:
62188227-62188372
146
HIF1A_HUMAN
76-124
49
0
-
-
1.4
ENST00000337138
4
ENSE00000658282
chr14:
62188457-62188541
85
HIF1A_HUMAN
125-153
29
0
-
-
1.5
ENST00000337138
5
ENSE00000658283
chr14:
62193424-62193536
113
HIF1A_HUMAN
153-190
38
0
-
-
1.6
ENST00000337138
6
ENSE00000658284
chr14:
62194171-62194373
203
HIF1A_HUMAN
191-258
68
0
-
-
1.7
ENST00000337138
7
ENSE00000658285
chr14:
62199136-62199242
107
HIF1A_HUMAN
258-294
37
0
-
-
1.8
ENST00000337138
8
ENSE00000658286
chr14:
62200856-62201003
148
HIF1A_HUMAN
294-343
50
0
-
-
1.9
ENST00000337138
9
ENSE00000658287
chr14:
62203607-62203827
221
HIF1A_HUMAN
343-417
75
0
-
-
1.10
ENST00000337138
10
ENSE00000658289
chr14:
62204805-62205091
287
HIF1A_HUMAN
417-512
96
0
-
-
1.11
ENST00000337138
11
ENSE00000658291
chr14:
62207223-62207345
123
HIF1A_HUMAN
513-553
41
0
-
-
1.12
ENST00000337138
12
ENSE00000658293
chr14:
62207473-62207906
434
HIF1A_HUMAN
554-698
145
0
-
-
1.13
ENST00000337138
13
ENSE00000658295
chr14:
62211423-62211531
109
HIF1A_HUMAN
698-734
37
0
-
-
1.14
ENST00000337138
14
ENSE00000658297
chr14:
62212409-62212535
127
HIF1A_HUMAN
735-777
43
0
-
-
1.15
ENST00000337138
15
ENSE00001660793
chr14:
62213652-62214976
1325
HIF1A_HUMAN
777-826
50
0
-
-
2.1a
ENST00000358595
1a
ENSE00002062254
chr1:
150849244-150849019
226
ARNT_HUMAN
1-9
9
0
-
-
2.3
ENST00000358595
3
ENSE00001717520
chr1:
150830936-150830825
112
ARNT_HUMAN
9-46
38
0
-
-
2.5b
ENST00000358595
5b
ENSE00001071957
chr1:
150825282-150825238
45
ARNT_HUMAN
46-61
16
0
-
-
2.6
ENST00000358595
6
ENSE00000960027
chr1:
150818783-150818739
45
ARNT_HUMAN
61-76
16
0
-
-
2.7
ENST00000358595
7
ENSE00001263986
chr1:
150814944-150814900
45
ARNT_HUMAN
76-91
16
1
C:1-5
5
2.8b
ENST00000358595
8b
ENSE00000960029
chr1:
150812130-150811917
214
ARNT_HUMAN
91-162
72
1
C:5-59
55
2.9c
ENST00000358595
9c
ENSE00000960030
chr1:
150808969-150808756
214
ARNT_HUMAN
163-234
72
0
-
-
2.10b
ENST00000358595
10b
ENSE00000960031
chr1:
150807116-150807014
103
ARNT_HUMAN
234-268
35
0
-
-
2.11
ENST00000358595
11
ENSE00000960032
chr1:
150804875-150804810
66
ARNT_HUMAN
268-290
23
0
-
-
2.12a
ENST00000358595
12a
ENSE00000960033
chr1:
150804379-150804294
86
ARNT_HUMAN
290-319
30
0
-
-
2.13d
ENST00000358595
13d
ENSE00001417988
chr1:
150802456-150802380
77
ARNT_HUMAN
319-344
26
0
-
-
2.15b
ENST00000358595
15b
ENSE00001414390
chr1:
150801703-150801569
135
ARNT_HUMAN
345-389
45
0
-
-
2.16
ENST00000358595
16
ENSE00001186051
chr1:
150799093-150799019
75
ARNT_HUMAN
390-414
25
0
-
-
2.17
ENST00000358595
17
ENSE00001804030
chr1:
150795821-150795670
152
ARNT_HUMAN
415-465
51
0
-
-
2.18b
ENST00000358595
18b
ENSE00001044530
chr1:
150790506-150790396
111
ARNT_HUMAN
465-502
38
0
-
-
2.19c
ENST00000358595
19c
ENSE00001044549
chr1:
150789909-150789837
73
ARNT_HUMAN
502-526
25
0
-
-
2.20
ENST00000358595
20
ENSE00001044525
chr1:
150789678-150789558
121
ARNT_HUMAN
527-567
41
0
-
-
2.21
ENST00000358595
21
ENSE00001044520
chr1:
150789366-150789264
103
ARNT_HUMAN
567-601
35
0
-
-
2.22a
ENST00000358595
22a
ENSE00001044548
chr1:
150788882-150788735
148
ARNT_HUMAN
601-650
50
0
-
-
2.23a
ENST00000358595
23a
ENSE00001151505
chr1:
150786715-150786553
163
ARNT_HUMAN
651-705
55
0
-
-
2.24a
ENST00000358595
24a
ENSE00001371736
chr1:
150785814-150785648
167
ARNT_HUMAN
705-760
56
0
-
-
2.25f
ENST00000358595
25f
ENSE00001855735
chr1:
150784586-150782181
2406
ARNT_HUMAN
761-789
29
0
-
-
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