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1D5T
Asym. Unit
Info
Asym.Unit (153 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR, ALPHA-ISOFORM
Authors
:
L. Peng, K. Zeng, A. Heine, B. Moyer, S. E. Greasley, P. Kuhn, W. E. Balch, I. A. Wilson
Date
:
11 Oct 99 (Deposition) - 25 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.04
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ultra-High Resolution, Hydrolase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Luan, A. Heine, K. Zeng, B. Moyer, S. E. Greasely, P. Kuhn, W. E. Balch, I. A. Wilson
A New Functional Domain Of Guanine Nucleotide Dissociation Inhibitor (Alpha-Gdi) Involved In Rab Recycling.
Traffic V. 1 270 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:117 , LYS A:118 , ASN A:130 , HOH A:1032 , HOH A:1169 , HOH A:1324
BINDING SITE FOR RESIDUE SO4 A 501
2
AC2
SOFTWARE
TYR A:192 , ARG A:193 , THR A:194 , HOH A:1064 , HOH A:1066 , HOH A:1316
BINDING SITE FOR RESIDUE SO4 A 502
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(11, 11)
Info
All Exons
Exon 1.1 (A:1-17)
Exon 1.2 (A:18-53)
Exon 1.3 (A:54-87)
Exon 1.4 (A:87-132)
Exon 1.5 (A:132-198)
Exon 1.6 (A:198-242)
Exon 1.7 (A:242-275)
Exon 1.8 (A:276-333)
Exon 1.9 (A:333-381)
Exon 1.10 (A:381-399)
Exon 1.11 (A:400-431)
View:
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000016093
1
ENSBTAE00000395537
X:23762869-23762919
51
GDIA_BOVIN
1-17
17
1
A:1-17
17
1.2
ENSBTAT00000016093
2
ENSBTAE00000244799
X:23763999-23764106
108
GDIA_BOVIN
18-53
36
1
A:18-53
36
1.3
ENSBTAT00000016093
3
ENSBTAE00000130996
X:23764264-23764363
100
GDIA_BOVIN
54-87
34
1
A:54-87
34
1.4
ENSBTAT00000016093
4
ENSBTAE00000131001
X:23764512-23764646
135
GDIA_BOVIN
87-132
46
1
A:87-132
46
1.5
ENSBTAT00000016093
5
ENSBTAE00000131002
X:23765114-23765312
199
GDIA_BOVIN
132-198
67
1
A:132-198
67
1.6
ENSBTAT00000016093
6
ENSBTAE00000131007
X:23765579-23765710
132
GDIA_BOVIN
198-242
45
1
A:198-242
45
1.7
ENSBTAT00000016093
7
ENSBTAE00000131011
X:23766257-23766356
100
GDIA_BOVIN
242-275
34
1
A:242-275
34
1.8
ENSBTAT00000016093
8
ENSBTAE00000131012
X:23766709-23766880
172
GDIA_BOVIN
276-333
58
1
A:276-333
58
1.9
ENSBTAT00000016093
9
ENSBTAE00000131015
X:23767184-23767328
145
GDIA_BOVIN
333-381
49
1
A:333-381
49
1.10
ENSBTAT00000016093
10
ENSBTAE00000131017
X:23767454-23767508
55
GDIA_BOVIN
381-399
19
1
A:381-399
19
1.11
ENSBTAT00000016093
11
ENSBTAE00000131035
X:23767599-23768631
1033
GDIA_BOVIN
400-449
50
1
A:400-431
32
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1d5ta2 (A:292-388)
2a: SCOP_d1d5ta1 (A:-2-291,A:389-431)
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Classes
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)
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Folds
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
GDI-like
(8)
Protein domain
:
Guanine nucleotide dissociation inhibitor, GDI
(5)
Cow (Bos taurus) [TaxId: 9913]
(3)
1a
d1d5ta2
A:292-388
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
GDI-like N domain
(11)
Protein domain
:
Guanine nucleotide dissociation inhibitor, GDI
(5)
Cow (Bos taurus) [TaxId: 9913]
(3)
2a
d1d5ta1
A:-2-291,A:389-431
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1d5tA02 (A:58-118,A:295-386)
2a: CATH_1d5tA01 (A:-2-57,A:224-294,A:387-431)
3a: CATH_1d5tA03 (A:119-223)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Guanine Nucleotide Dissociation Inhibitor; domain 2
(11)
Homologous Superfamily
:
Guanine Nucleotide Dissociation Inhibitor, domain 2
(11)
Cattle (Bos taurus)
(3)
1a
1d5tA02
A:58-118,A:295-386
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Cattle (Bos taurus)
(4)
2a
1d5tA01
A:-2-57,A:224-294,A:387-431
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Guanine Nucleotide Dissociation Inhibitor; domain 1
(50)
Homologous Superfamily
:
Guanine Nucleotide Dissociation Inhibitor, domain 1
(50)
Cattle (Bos taurus)
(3)
3a
1d5tA03
A:119-223
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (153 KB)
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