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1D5B
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (66 KB)
Biol.Unit 3 (66 KB)
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(1)
Title
:
UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY
Authors
:
E. C. Mundorff, M. A. Hanson, P. G. Schultz, R. C. Stevens
Date
:
06 Oct 99 (Deposition) - 09 Feb 00 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,H,L
Biol. Unit 1: A,B,H,L (1x)
Biol. Unit 2: H,L (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. C. Mundorff, M. A. Hanson, A. Varvak, H. Ulrich, P. G. Schultz, R. C. Stevens
Conformational Effects In Biological Catalysis: An Antibody-Catalyzed Oxy-Cope Rearrangement.
Biochemistry V. 39 627 2000
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
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Label:
No.
Name
Count
Type
Full Name
1
CD
1
Ligand/Ion
CADMIUM ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:1 , GLN A:27 , GLU A:93 , HIS L:198 , LEU L:201
BINDING SITE FOR RESIDUE CD A 212
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_066403 (W148R, chain A/L, )
2: VAR_003897 (V191L, chain A/L, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_066403
W
40
R
IGKC_HUMAN
Disease (IGKCD)
---
A/L
W
148
R
2
UniProt
VAR_003897
V
83
L
IGKC_HUMAN
Unclassified
---
A/L
V
191
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:192-198,L:192-198,B:194-200,H:19...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_HUMAN
85-91
2
A:192-198
L:192-198
IGG1_HUMAN
200-206
425-431
2
B:194-200
H:194-200
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1d5bb2 (B:114-214)
1b: SCOP_d1d5bh2 (H:114-214)
2a: SCOP_d1d5ba2 (A:108-211)
2b: SCOP_d1d5bl2 (L:108-211)
3a: SCOP_d1d5bb1 (B:1-113)
3b: SCOP_d1d5bh1 (H:1-113)
4a: SCOP_d1d5ba1 (A:1-107)
4b: SCOP_d1d5bl1 (L:1-107)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1d5bb2
B:114-214
1b
d1d5bh2
H:114-214
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1d5ba2
A:108-211
2b
d1d5bl2
L:108-211
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1d5bb1
B:1-113
3b
d1d5bh1
H:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1d5ba1
A:1-107
4b
d1d5bl1
L:1-107
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1d5bA02 (A:109-211)
1b: CATH_1d5bL02 (L:109-211)
1c: CATH_1d5bB01 (B:1-113)
1d: CATH_1d5bH01 (H:1-113)
1e: CATH_1d5bA01 (A:1-108)
1f: CATH_1d5bL01 (L:1-108)
1g: CATH_1d5bB02 (B:114-213)
1h: CATH_1d5bH02 (H:114-213)
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)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse, human (Mus musculus, homo sapiens)
(20)
1a
1d5bA02
A:109-211
1b
1d5bL02
L:109-211
1c
1d5bB01
B:1-113
1d
1d5bH01
H:1-113
1e
1d5bA01
A:1-108
1f
1d5bL01
L:1-108
1g
1d5bB02
B:114-213
1h
1d5bH02
H:114-213
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (133 KB)
Header - Asym.Unit
Biol.Unit 1 (127 KB)
Header - Biol.Unit 1
Biol.Unit 2 (66 KB)
Header - Biol.Unit 2
Biol.Unit 3 (66 KB)
Header - Biol.Unit 3
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