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1D4O
Asym. Unit
Info
Asym.Unit (37 KB)
Biol.Unit 1 (33 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSHYDROGENASE DOMAIN III AT 1.2 ANGSTROMS RESOLUTION
Authors
:
G. S. Prasad, V. Sridhar, M. Yamaguchi, Y. Hatefi, C. D. Stout
Date
:
04 Oct 99 (Deposition) - 20 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.21
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nucleotide-Binding Fold, Protein-Nadp(H) Complex, Inverted Binding Of Nadp(H), Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. S. Prasad, V. Sridhar, M. Yamaguchi, Y. Hatefi, C. D. Stout
Crystal Structure Of Transhydrogenase Domain Iii At 1. 2 A Resolution.
Nat. Struct. Biol. V. 6 1126 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:23 , GLY A:30 , TYR A:31 , GLY A:32 , ALA A:35 , ALA A:36 , VAL A:63 , ALA A:64 , GLY A:65 , ARG A:66 , MET A:67 , PRO A:68 , GLY A:105 , ALA A:106 , ASN A:107 , ASP A:108 , THR A:109 , LYS A:140 , ARG A:141 , SER A:142 , VAL A:145 , GLY A:146 , TYR A:147 , ASP A:166 , ALA A:167 , HOH A:314 , HOH A:326 , HOH A:353 , HOH A:357 , HOH A:366 , HOH A:442
BINDING SITE FOR RESIDUE NAP A 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.17 (A:5-30)
Exon 1.18 (A:30-57)
Exon 1.19 (A:57-97)
Exon 1.20 (A:97-135)
Exon 1.21b (A:136-181)
View:
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All Exon Boundaries
1: Boundary 1.16/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19
4: Boundary 1.19/1.20
5: Boundary 1.20/1.21b
6: Boundary 1.21b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSBTAT00000015769
1a
ENSBTAE00000128321
chr20:
33185168-33184964
205
NNTM_BOVIN
1-51
51
0
-
-
1.2
ENSBTAT00000015769
2
ENSBTAE00000128327
chr20:
33178970-33178741
230
NNTM_BOVIN
51-127
77
0
-
-
1.3
ENSBTAT00000015769
3
ENSBTAE00000128331
chr20:
33175581-33175364
218
NNTM_BOVIN
128-200
73
0
-
-
1.4
ENSBTAT00000015769
4
ENSBTAE00000128333
chr20:
33171055-33170968
88
NNTM_BOVIN
200-229
30
0
-
-
1.5
ENSBTAT00000015769
5
ENSBTAE00000128335
chr20:
33166499-33166411
89
NNTM_BOVIN
230-259
30
0
-
-
1.6
ENSBTAT00000015769
6
ENSBTAE00000128337
chr20:
33163276-33163089
188
NNTM_BOVIN
259-322
64
0
-
-
1.7
ENSBTAT00000015769
7
ENSBTAE00000128339
chr20:
33145052-33144919
134
NNTM_BOVIN
322-366
45
0
-
-
1.8
ENSBTAT00000015769
8
ENSBTAE00000128341
chr20:
33144647-33144456
192
NNTM_BOVIN
367-430
64
0
-
-
1.9
ENSBTAT00000015769
9
ENSBTAE00000128343
chr20:
33143472-33143319
154
NNTM_BOVIN
431-482
52
0
-
-
1.10
ENSBTAT00000015769
10
ENSBTAE00000128344
chr20:
33140351-33140190
162
NNTM_BOVIN
482-536
55
0
-
-
1.11
ENSBTAT00000015769
11
ENSBTAE00000128345
chr20:
33139115-33139005
111
NNTM_BOVIN
536-573
38
0
-
-
1.12
ENSBTAT00000015769
12
ENSBTAE00000128346
chr20:
33138058-33137913
146
NNTM_BOVIN
573-621
49
0
-
-
1.13
ENSBTAT00000015769
13
ENSBTAE00000128347
chr20:
33136683-33136488
196
NNTM_BOVIN
622-687
66
0
-
-
1.14
ENSBTAT00000015769
14
ENSBTAE00000128348
chr20:
33133045-33132812
234
NNTM_BOVIN
687-765
79
0
-
-
1.15
ENSBTAT00000015769
15
ENSBTAE00000128349
chr20:
33131707-33131547
161
NNTM_BOVIN
765-818
54
0
-
-
1.16
ENSBTAT00000015769
16
ENSBTAE00000128350
chr20:
33129981-33129802
180
NNTM_BOVIN
819-878
60
0
-
-
1.17
ENSBTAT00000015769
17
ENSBTAE00000128351
chr20:
33122899-33122740
160
NNTM_BOVIN
879-932
54
1
A:5-30
26
1.18
ENSBTAT00000015769
18
ENSBTAE00000287971
chr20:
33120337-33120256
82
NNTM_BOVIN
932-959
28
1
A:30-57
28
1.19
ENSBTAT00000015769
19
ENSBTAE00000128353
chr20:
33102801-33102683
119
NNTM_BOVIN
959-999
41
1
A:57-97
41
1.20
ENSBTAT00000015769
20
ENSBTAE00000128354
chr20:
33101215-33101100
116
NNTM_BOVIN
999-1037
39
1
A:97-135
39
1.21b
ENSBTAT00000015769
21b
ENSBTAE00000128355
chr20:
33099105-33098561
545
NNTM_BOVIN
1038-1086
49
1
A:136-181
46
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1d4oa_ (A:)
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)
(
)
Folds
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
DHS-like NAD/FAD-binding domain
(176)
Superfamily
:
DHS-like NAD/FAD-binding domain
(176)
Family
:
Transhydrogenase domain III (dIII)
(22)
Protein domain
:
Transhydrogenase domain III (dIII)
(19)
Cow (Bos taurus) [TaxId: 9913]
(1)
1a
d1d4oa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1d4oA00 (A:5-181)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
TPP-binding domain
(120)
Cattle (Bos taurus)
(1)
1a
1d4oA00
A:5-181
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (37 KB)
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