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1D3V
Biol. Unit 1
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Asym.Unit (106 KB)
Biol.Unit 1 (150 KB)
Biol.Unit 2 (150 KB)
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Title
:
CRYSTAL STRUCTURE OF THE BINUCLEAR MANGANESE METALLOENZYME ARGINASE COMPLEXED WITH 2(S)-AMINO-6-BORONOHEXANOIC ACID, AN L-ARGININE ANALOG
Authors
:
J. D. Cox, N. N. Kim, A. M. Traish, D. W. Christianson
Date
:
01 Oct 99 (Deposition) - 17 Nov 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Binuclear Manganese Cluster, Boronic Acid Inhibitor, Perfectly Twinned Crystal, Hydrolase
(Keyword Search:
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Reference
:
J. D. Cox, N. N. Kim, A. M. Traish, D. W. Christianson
Arginase-Boronic Acid Complex Highlights A Physiological Role In Erectile Function.
Nat. Struct. Biol. V. 6 1043 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: 2(S)-AMINO-6-BORONOHEXANOIC ACID (ABHa)
1b: 2(S)-AMINO-6-BORONOHEXANOIC ACID (ABHb)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
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No.
Name
Count
Type
Full Name
1
ABH
3
Ligand/Ion
2(S)-AMINO-6-BORONOHEXANOIC ACID
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:101 , ASP A:124 , ASP A:128 , ASP A:232 , MN A:501 , ABH A:551
BINDING SITE FOR RESIDUE MN A 500
2
AC2
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:232 , ASP A:234 , MN A:500 , ABH A:551
BINDING SITE FOR RESIDUE MN A 501
3
AC5
SOFTWARE
HIS A:101 , ASP A:124 , HIS A:126 , ASP A:128 , ASN A:130 , SER A:137 , HIS A:141 , ASP A:183 , GLU A:186 , ASP A:232 , ASP A:234 , GLU A:277 , MN A:500 , MN A:501 , HOH A:645 , HOH A:646 , HOH A:647 , HOH A:648 , HOH A:684
BINDING SITE FOR RESIDUE ABH A 551
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 3)
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1: ARGINASE_1 (A:230-251)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI1_RAT
230-251
3
A:230-251
-
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Exons
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1d3va_ (A:)
1b: SCOP_d1d3vb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(34)
1a
d1d3va_
A:
1b
d1d3vb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1d3vA00 (A:6-313)
1b: CATH_1d3vB00 (B:6-313)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Norway rat (Rattus norvegicus)
(31)
1a
1d3vA00
A:6-313
1b
1d3vB00
B:6-313
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Pfam Domains
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Asym.Unit (106 KB)
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