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1D3L
Asym. Unit
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Asym.Unit (8 KB)
Biol.Unit 1 (5 KB)
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(1)
Title
:
D1D2-ICAM-1 FULLY GLYCOSYLATED, VARIATION OF D1-D2 INTERDOMAIN ANGLE IN DIFFERENT CRYSTAL STRUCTURES.
Authors
:
J. Bella, P. R. Kolatkar, M. G. Rossmann
Date
:
29 Sep 99 (Deposition) - 01 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rhinovirus Receptor, Adhesion Protein, Glycoprotein, Immunoglobulin Fold, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. R. Kolatkar, J. Bella, N. H. Olson, C. M. Bator, T. S. Baker, M. G. Rossmann
Structural Studies Of Two Rhinovirus Serotypes Complexed With Fragments Of Their Cellular Receptor.
Embo J. V. 18 6249 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(4, 4)
Info
All Sites
1: GS1 (AUTHOR)
2: GS2 (AUTHOR)
3: GS3 (AUTHOR)
4: GS4 (AUTHOR)
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Label:
No.
Name
Evidence
Residues
Description
1
GS1
AUTHOR
ASN A:103
N-GLYCOSYLATION SITE
2
GS2
AUTHOR
ASN A:118
N-GLYCOSYLATION SITE
3
GS3
AUTHOR
ASN A:156
N-GLYCOSYLATION SITE
4
GS4
AUTHOR
ASN A:175
N-GLYCOSYLATION SITE
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049879 (S7C, chain A, )
2: VAR_010204 (K29M, chain A, )
3: VAR_014651 (K128N, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049879
S
34
C
ICAM1_HUMAN
Polymorphism
5491
A
S
7
C
2
UniProt
VAR_010204
K
56
M
ICAM1_HUMAN
Polymorphism
5491
A
K
29
M
3
UniProt
VAR_014651
K
155
N
ICAM1_HUMAN
Polymorphism
5492
A
K
128
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 2)
Info
All Exons
Exon 1.2b (A:1-84)
Exon 1.3a (A:84-185)
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All Exon Boundaries
1: Boundary 1.1/1.2b
2: Boundary 1.2b/1.3a
3: Boundary 1.3a/1.4a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264832
1
ENSE00001235328
chr19:
10381517-10381902
386
ICAM1_HUMAN
1-23
23
0
-
-
1.2b
ENST00000264832
2b
ENSE00000576130
chr19:
10385441-10385704
264
ICAM1_HUMAN
23-111
89
1
A:1-84
84
1.3a
ENST00000264832
3a
ENSE00000676100
chr19:
10394157-10394462
306
ICAM1_HUMAN
111-213
103
1
A:84-185
102
1.4a
ENST00000264832
4a
ENSE00000676102
chr19:
10394709-10394996
288
ICAM1_HUMAN
213-309
97
0
-
-
1.5
ENST00000264832
5
ENSE00000676105
chr19:
10395079-10395333
255
ICAM1_HUMAN
309-394
86
0
-
-
1.6a
ENST00000264832
6a
ENSE00000676106
chr19:
10395459-10395704
246
ICAM1_HUMAN
394-476
83
0
-
-
1.7b
ENST00000264832
7b
ENSE00000872752
chr19:
10395791-10397291
1501
ICAM1_HUMAN
476-532
57
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1d3la1 (A:83-185)
2a: SCOP_d1d3la2 (A:1-82)
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Protein Domains
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(
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C2 set domains
(47)
Protein domain
:
Intercellular cell adhesion molecule-1 (ICAM-1)
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1d3la1
A:83-185
Family
:
I set domains
(152)
Protein domain
:
Intercellular adhesion molecule-1, ICAM-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1d3la2
A:1-82
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (8 KB)
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