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1D2G
Asym. Unit
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Asym.Unit (104 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (197 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF R175K MUTANT GLYCINE N-METHYLTRANSFERASE FROM RAT LIVER
Authors
:
Y. Huang, J. Komoto, F. Takusagawa, K. Konishi, Y. Takata
Date
:
08 Oct 99 (Deposition) - 25 Oct 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Methyltransferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Y. Huang, J. Komoto, K. Konishi, Y. Takata, H. Ogawa, T. Gomi, M. Fujioka, F. Takusagawa
Mechanisms For Auto-Inhibition And Forced Product Release In Glycine N-Methyltransferase: Crystal Structures Of Wild-Type, Mutant R175K And S-Adenosylhomocysteine-Bound R175K Enzymes.
J. Mol. Biol. V. 298 149 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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PROSITE Patterns/Profiles
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Exons
(6, 12)
Info
All Exons
Exon 1.1 (A:1-68 | B:1-68)
Exon 1.2 (A:68-111 | B:68-111)
Exon 1.3 (A:111-148 | B:111-148)
Exon 1.4 (A:148-195 | B:148-195)
Exon 1.5 (A:196-236 | B:196-236)
Exon 1.6 (A:236-292 | B:236-292)
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000022307
1
ENSRNOE00000155790
chr9:
10127092-10127301
210
GNMT_RAT
1-69
69
2
A:1-68
B:1-68
68
68
1.2
ENSRNOT00000022307
2
ENSRNOE00000156216
chr9:
10128745-10128872
128
GNMT_RAT
69-112
44
2
A:68-111
B:68-111
44
44
1.3
ENSRNOT00000022307
3
ENSRNOE00000156616
chr9:
10129429-10129539
111
GNMT_RAT
112-149
38
2
A:111-148
B:111-148
38
38
1.4
ENSRNOT00000022307
4
ENSRNOE00000157087
chr9:
10129733-10129875
143
GNMT_RAT
149-196
48
2
A:148-195
B:148-195
48
48
1.5
ENSRNOT00000022307
5
ENSRNOE00000157394
chr9:
10129963-10130084
122
GNMT_RAT
197-237
41
2
A:196-236
B:196-236
41
41
1.6
ENSRNOT00000022307
6
ENSRNOE00000157770
chr9:
10130171-10130444
274
GNMT_RAT
237-293
57
2
A:236-292
B:236-292
57
57
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1d2ga_ (A:)
1b: SCOP_d1d2gb_ (B:)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Glycine N-methyltransferase
(16)
Protein domain
:
Glycine N-methyltransferase
(16)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(12)
1a
d1d2ga_
A:
1b
d1d2gb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1d2gA01 (A:22-37,A:176-242)
1b: CATH_1d2gB01 (B:22-37,B:176-242)
2a: CATH_1d2gA02 (A:38-175,A:243-292)
2b: CATH_1d2gB02 (B:38-175,B:243-292)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Glycine N-methyltransferase; chain A, domain 1
(14)
Homologous Superfamily
:
Glycine N-methyltransferase, chain A, domain 1
(14)
Norway rat (Rattus norvegicus)
(9)
1a
1d2gA01
A:22-37,A:176-242
1b
1d2gB01
B:22-37,B:176-242
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Norway rat (Rattus norvegicus)
(23)
2a
1d2gA02
A:38-175,A:243-292
2b
1d2gB02
B:38-175,B:243-292
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Pfam Domains
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Asym.Unit (104 KB)
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