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Getting 'Exon' information from database.
1D1T
Asym. Unit
Info
Asym.Unit (250 KB)
Biol.Unit 1 (241 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (124 KB)
Biol.Unit 4 (124 KB)
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(1)
Title
:
MUTANT OF HUMAN SIGMA ALCOHOL DEHYDROGENASE WITH LEUCINE AT POSITION 141
Authors
:
P. T. Xie, T. D. Hurley
Date
:
21 Sep 99 (Deposition) - 29 Sep 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: C,D (1x)
Keywords
:
Rossmann Or Dinucleotide Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. T. Xie, T. D. Hurley
Methionine-141 Directly Influences The Binding Of 4-Methylpyrazole In Human Sigma Sigma Alcohol Dehydrogenase
Protein Sci. V. 8 2639 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 41)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
2c: CACODYLATE ION (CACc)
2d: CACODYLATE ION (CACd)
2e: CACODYLATE ION (CACe)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
4m: ZINC ION (ZNm)
4n: ZINC ION (ZNn)
4o: ZINC ION (ZNo)
4p: ZINC ION (ZNp)
4q: ZINC ION (ZNq)
4r: ZINC ION (ZNr)
4s: ZINC ION (ZNs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
13
Ligand/Ion
ACETATE ION
2
CAC
5
Ligand/Ion
CACODYLATE ION
3
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
ZN
19
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111
BINDING SITE FOR RESIDUE ZN A 375
02
AC2
SOFTWARE
CYS A:46 , HIS A:67 , CYS A:174 , ACT A:501 , NAD A:1377
BINDING SITE FOR RESIDUE ZN A 376
03
AC3
SOFTWARE
CYS B:97 , CYS B:100 , CYS B:103 , CYS B:111
BINDING SITE FOR RESIDUE ZN B 375
04
AC4
SOFTWARE
CYS B:46 , HIS B:67 , CYS B:174 , ACT B:506 , NAD B:2377
BINDING SITE FOR RESIDUE ZN B 376
05
AC5
SOFTWARE
CYS C:97 , CYS C:100 , CYS C:103 , CYS C:111 , ILE C:112
BINDING SITE FOR RESIDUE ZN C 375
06
AC6
SOFTWARE
CYS C:46 , THR C:48 , HIS C:67 , CYS C:174 , ACT C:505 , NAD C:3377
BINDING SITE FOR RESIDUE ZN C 376
07
AC7
SOFTWARE
CYS D:97 , CYS D:100 , CYS D:103 , CYS D:111
BINDING SITE FOR RESIDUE ZN D 375
08
AC8
SOFTWARE
CYS D:46 , HIS D:67 , CYS D:174 , ACT D:511 , NAD D:4377
BINDING SITE FOR RESIDUE ZN D 376
09
AC9
SOFTWARE
HIS A:271 , ACT A:504 , HOH A:749 , NAD A:1377
BINDING SITE FOR RESIDUE ZN A 401
10
BC1
SOFTWARE
HIS A:138 , ACT A:502 , ACT A:513
BINDING SITE FOR RESIDUE ZN A 402
11
BC2
SOFTWARE
HIS B:271 , ACT B:507 , HOH B:735 , NAD B:2377
BINDING SITE FOR RESIDUE ZN A 403
12
BC3
SOFTWARE
HIS B:138 , HOH B:725 , GLU D:357 , GLU D:360
BINDING SITE FOR RESIDUE ZN B 404
13
BC4
SOFTWARE
ASP B:341 , GLU D:99 , ACT D:508 , ACT D:509
BINDING SITE FOR RESIDUE ZN B 405
14
BC5
SOFTWARE
GLU B:16 , CAC B:991 , CAC B:992 , CAC B:993
BINDING SITE FOR RESIDUE ZN B 406
15
BC6
SOFTWARE
HIS C:271 , ACT C:510 , HOH C:771 , NAD C:3377
BINDING SITE FOR RESIDUE ZN C 407
16
BC7
SOFTWARE
GLU A:357 , GLU A:360 , HOH A:793 , HIS C:138
BINDING SITE FOR RESIDUE ZN A 408
17
BC8
SOFTWARE
HIS D:271 , ACT D:512 , HOH D:780 , NAD D:4377
BINDING SITE FOR RESIDUE ZN D 409
18
BC9
SOFTWARE
HIS D:138 , ACT D:514 , HOH D:693 , HOH D:867
BINDING SITE FOR RESIDUE ZN D 410
19
CC1
SOFTWARE
CAC B:991 , CAC B:992 , CAC B:993 , HIS D:348
BINDING SITE FOR RESIDUE ZN D 411
20
CC2
SOFTWARE
CYS A:46 , THR A:48 , HIS A:67 , PHE A:93 , LEU A:141 , CYS A:174 , VAL A:294 , ZN A:376 , HOH A:912 , NAD A:1377
BINDING SITE FOR RESIDUE ACT A 501
21
CC3
SOFTWARE
LYS A:60 , HIS A:138 , ZN A:402 , ACT A:513
BINDING SITE FOR RESIDUE ACT A 502
22
CC4
SOFTWARE
LEU A:224 , ZN A:401 , NAD A:1377
BINDING SITE FOR RESIDUE ACT A 504
23
CC5
SOFTWARE
CYS C:46 , THR C:48 , HIS C:67 , PHE C:93 , CYS C:174 , VAL C:294 , ZN C:376 , NAD C:3377
BINDING SITE FOR RESIDUE ACT C 505
24
CC6
SOFTWARE
THR B:48 , HIS B:67 , PHE B:93 , LEU B:141 , CYS B:174 , ZN B:376 , NAD B:2377
BINDING SITE FOR RESIDUE ACT B 506
25
CC7
SOFTWARE
ZN A:403 , LEU B:224 , HIS B:271 , HOH B:735 , NAD B:2377
BINDING SITE FOR RESIDUE ACT B 507
26
CC8
SOFTWARE
ZN B:405 , GLU D:99 , ARG D:113 , ACT D:509
BINDING SITE FOR RESIDUE ACT D 508
27
CC9
SOFTWARE
ASP B:341 , ZN B:405 , LYS D:34 , GLU D:99 , ACT D:508
BINDING SITE FOR RESIDUE ACT D 509
28
DC1
SOFTWARE
HIS C:271 , ZN C:407 , NAD C:3377
BINDING SITE FOR RESIDUE ACT C 510
29
DC2
SOFTWARE
THR D:48 , HIS D:67 , LEU D:141 , CYS D:174 , ZN D:376 , NAD D:4377
BINDING SITE FOR RESIDUE ACT D 511
30
DC3
SOFTWARE
HIS D:271 , ZN D:409
BINDING SITE FOR RESIDUE ACT D 512
31
DC4
SOFTWARE
HIS A:138 , ZN A:402 , ACT A:502
BINDING SITE FOR RESIDUE ACT A 513
32
DC5
SOFTWARE
HIS D:138 , ZN D:410 , HOH D:693
BINDING SITE FOR RESIDUE ACT D 514
33
DC6
SOFTWARE
GLU B:16 , PHE B:61 , PRO B:62 , ZN B:406 , CAC B:992 , CAC B:993 , HIS D:348 , GLN D:366 , ZN D:411 , HOH D:983
BINDING SITE FOR RESIDUE CAC B 991
34
DC7
SOFTWARE
GLU B:16 , ZN B:406 , CAC B:991 , CAC B:993 , HIS D:348 , ZN D:411
BINDING SITE FOR RESIDUE CAC B 992
35
DC8
SOFTWARE
GLU B:16 , ZN B:406 , CAC B:991 , CAC B:992 , HIS D:348 , ZN D:411
BINDING SITE FOR RESIDUE CAC B 993
36
DC9
SOFTWARE
MET A:233 , ALA A:237 , HOH A:889
BINDING SITE FOR RESIDUE CAC A 994
37
EC1
SOFTWARE
GLY A:259 , ASN A:260 , CYS B:100 , ASN B:101 , ILE B:112 , HOH B:613
BINDING SITE FOR RESIDUE CAC B 995
38
EC2
SOFTWARE
ARG A:47 , THR A:48 , HIS A:51 , CYS A:174 , THR A:178 , GLY A:201 , GLY A:202 , VAL A:203 , ASP A:223 , LEU A:224 , LYS A:228 , VAL A:268 , ILE A:269 , GLY A:270 , HIS A:271 , VAL A:292 , GLY A:293 , VAL A:294 , CYS A:317 , PHE A:319 , ARG A:369 , ZN A:376 , ZN A:401 , ACT A:501 , ACT A:504 , HOH A:623 , HOH A:901 , HOH A:911 , PHE B:309
BINDING SITE FOR RESIDUE NAD A 1377
39
EC3
SOFTWARE
PHE A:309 , ZN A:403 , ARG B:47 , THR B:48 , HIS B:51 , CYS B:174 , THR B:178 , GLY B:201 , GLY B:202 , VAL B:203 , ASP B:223 , LEU B:224 , LYS B:228 , VAL B:268 , ILE B:269 , HIS B:271 , VAL B:292 , GLY B:293 , VAL B:294 , CYS B:317 , VAL B:318 , PHE B:319 , ARG B:369 , ZN B:376 , ACT B:506 , ACT B:507 , HOH B:697 , HOH B:897 , HOH B:900
BINDING SITE FOR RESIDUE NAD B 2377
40
EC4
SOFTWARE
ARG C:47 , THR C:48 , HIS C:51 , CYS C:174 , THR C:178 , GLY C:199 , LEU C:200 , GLY C:201 , GLY C:202 , VAL C:203 , ASP C:223 , LEU C:224 , LYS C:228 , ILE C:269 , HIS C:271 , VAL C:292 , GLY C:293 , VAL C:294 , CYS C:317 , VAL C:318 , PHE C:319 , ARG C:369 , ZN C:376 , ZN C:407 , ACT C:505 , ACT C:510 , HOH C:770 , HOH C:771 , HOH C:845 , HOH C:846 , PHE D:309
BINDING SITE FOR RESIDUE NAD C 3377
41
EC5
SOFTWARE
PHE C:309 , ARG D:47 , THR D:48 , HIS D:51 , CYS D:174 , THR D:178 , GLY D:199 , LEU D:200 , GLY D:201 , GLY D:202 , VAL D:203 , ASP D:223 , LEU D:224 , LYS D:228 , VAL D:268 , ILE D:269 , HIS D:271 , VAL D:292 , GLY D:293 , VAL D:294 , CYS D:317 , PHE D:319 , ARG D:369 , ZN D:376 , ZN D:409 , ACT D:511 , HOH D:737 , HOH D:859 , HOH D:960
BINDING SITE FOR RESIDUE NAD D 4377
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024364 (G79A, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024364
G
92
A
ADH7_HUMAN
Polymorphism
1573496
A/B/C/D
G
79
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:66-80,B:66-80,C:66-80,D:66-80)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH7_HUMAN
79-93
4
A:66-80
B:66-80
C:66-80
D:66-80
[
close PROSITE info
]
Exons
(9, 36)
Info
All Exons
Exon 1.1b (A:1-5 | B:1-5 | C:1-5 | D:1-5)
Exon 1.5 (A:6-39 | B:6-39 | C:6-39 | D:6-39)
Exon 1.6 (A:40-86 | B:40-86 | C:40-86 | D:40...)
Exon 1.7 (A:86-115 | B:86-115 | C:86-115 | D...)
Exon 1.8b (A:115-188 (gaps) | B:115-188 (gaps...)
Exon 1.9 (A:189-275 | B:189-275 | C:189-275 ...)
Exon 1.10 (A:276-321 | B:276-321 | C:276-321 ...)
Exon 1.11b (A:321-367 | B:321-367 | C:321-367 ...)
Exon 1.12d (A:367-374 | B:367-374 | C:367-374 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.5
03: Boundary 1.5/1.6
04: Boundary 1.6/1.7
05: Boundary 1.7/1.8b
06: Boundary 1.8b/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11b
09: Boundary 1.11b/1.12d
10: Boundary 1.12d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000209665
1b
ENSE00001375930
chr4:
100356525-100356373
153
ADH7_HUMAN
1-18
18
4
A:1-5
B:1-5
C:1-5
D:1-5
5
5
5
5
1.5
ENST00000209665
5
ENSE00001667041
chr4:
100350790-100350689
102
ADH7_HUMAN
19-52
34
4
A:6-39
B:6-39
C:6-39
D:6-39
34
34
34
34
1.6
ENST00000209665
6
ENSE00001323821
chr4:
100349787-100349649
139
ADH7_HUMAN
53-99
47
4
A:40-86
B:40-86
C:40-86
D:40-86
47
47
47
47
1.7
ENST00000209665
7
ENSE00000733632
chr4:
100349331-100349244
88
ADH7_HUMAN
99-128
30
4
A:86-115
B:86-115
C:86-115
D:86-115
30
30
30
30
1.8b
ENST00000209665
8b
ENSE00000733629
chr4:
100349146-100348930
217
ADH7_HUMAN
128-200
73
4
A:115-188 (gaps)
B:115-188 (gaps)
C:115-188 (gaps)
D:115-188 (gaps)
74
74
74
74
1.9
ENST00000209665
9
ENSE00000733625
chr4:
100341950-100341690
261
ADH7_HUMAN
201-287
87
4
A:189-275
B:189-275
C:189-275
D:189-275
87
87
87
87
1.10
ENST00000209665
10
ENSE00000733622
chr4:
100340278-100340143
136
ADH7_HUMAN
288-333
46
4
A:276-321
B:276-321
C:276-321
D:276-321
46
46
46
46
1.11b
ENST00000209665
11b
ENSE00000801334
chr4:
100336773-100336635
139
ADH7_HUMAN
333-379
47
4
A:321-367
B:321-367
C:321-367
D:321-367
47
47
47
47
1.12d
ENST00000209665
12d
ENSE00001370955
chr4:
100334329-100333418
912
ADH7_HUMAN
379-386
8
4
A:367-374
B:367-374
C:367-374
D:367-374
8
8
8
8
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1d1ta1 (A:1-162,A:339-374)
1b: SCOP_d1d1tb1 (B:1-162,B:339-374)
1c: SCOP_d1d1tc1 (C:1-162,C:339-374)
1d: SCOP_d1d1td1 (D:1-162,D:339-374)
2a: SCOP_d1d1ta2 (A:163-338)
2b: SCOP_d1d1tb2 (B:163-338)
2c: SCOP_d1d1tc2 (C:163-338)
2d: SCOP_d1d1td2 (D:163-338)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
1a
d1d1ta1
A:1-162,A:339-374
1b
d1d1tb1
B:1-162,B:339-374
1c
d1d1tc1
C:1-162,C:339-374
1d
d1d1td1
D:1-162,D:339-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
2a
d1d1ta2
A:163-338
2b
d1d1tb2
B:163-338
2c
d1d1tc2
C:163-338
2d
d1d1td2
D:163-338
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1d1tA02 (A:179-317)
1b: CATH_1d1tB02 (B:179-317)
1c: CATH_1d1tC02 (C:179-317)
1d: CATH_1d1tD02 (D:179-317)
2a: CATH_1d1tA01 (A:1-178,A:318-374)
2b: CATH_1d1tB01 (B:1-178,B:318-374)
2c: CATH_1d1tC01 (C:1-178,C:318-374)
2d: CATH_1d1tD01 (D:1-178,D:318-374)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1d1tA02
A:179-317
1b
1d1tB02
B:179-317
1c
1d1tC02
C:179-317
1d
1d1tD02
D:179-317
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Human (Homo sapiens)
(30)
2a
1d1tA01
A:1-178,A:318-374
2b
1d1tB01
B:1-178,B:318-374
2c
1d1tC01
C:1-178,C:318-374
2d
1d1tD01
D:1-178,D:318-374
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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by Chain (Biol. Unit)
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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