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1D1S
Biol. Unit 4
Info
Asym.Unit (251 KB)
Biol.Unit 1 (242 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (125 KB)
Biol.Unit 4 (124 KB)
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(1)
Title
:
WILD-TYPE HUMAN SIGMA (CLASS IV) ALCOHOL DEHYDROGENASE
Authors
:
P. T. Xie, T. D. Hurley
Date
:
21 Sep 99 (Deposition) - 29 Sep 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: C,D (1x)
Keywords
:
Rossman Or Dinucleotide Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. T. Xie, T. D. Hurley
Methionine-141 Directly Influences The Binding Of 4-Methylpyrazole In Human Sigma Sigma Alcohol Dehydrogenase
Protein Sci. V. 8 2639 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
1k: ACETATE ION (ACTk)
1l: ACETATE ION (ACTl)
1m: ACETATE ION (ACTm)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
2c: CACODYLATE ION (CACc)
2d: CACODYLATE ION (CACd)
2e: CACODYLATE ION (CACe)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
4m: ZINC ION (ZNm)
4n: ZINC ION (ZNn)
4o: ZINC ION (ZNo)
4p: ZINC ION (ZNp)
4q: ZINC ION (ZNq)
4r: ZINC ION (ZNr)
4s: ZINC ION (ZNs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
7
Ligand/Ion
ACETATE ION
2
CAC
-1
Ligand/Ion
CACODYLATE ION
3
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC5 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
18: DC5 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: DC8 (SOFTWARE)
22: EC4 (SOFTWARE)
23: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
CYS D:97 , CYS D:100 , CYS D:103 , CYS D:111
BINDING SITE FOR RESIDUE ZN D 375
02
AC4
SOFTWARE
CYS D:46 , HIS D:67 , CYS D:174 , ACT D:511
BINDING SITE FOR RESIDUE ZN D 376
03
AC7
SOFTWARE
CYS C:97 , CYS C:100 , CYS C:103 , CYS C:111
BINDING SITE FOR RESIDUE ZN C 375
04
AC8
SOFTWARE
CYS C:46 , HIS C:67 , CYS C:174 , ACT C:505
BINDING SITE FOR RESIDUE ZN C 376
05
BC3
SOFTWARE
HIS B:138 , HOH B:725 , GLU D:357 , GLU D:360
BINDING SITE FOR RESIDUE ZN B 404
06
BC4
SOFTWARE
ASP B:341 , GLU D:99 , ACT D:508 , ACT D:509
BINDING SITE FOR RESIDUE ZN B 405
07
BC6
SOFTWARE
HIS C:271 , ACT C:510 , HOH C:771 , NAD C:3377
BINDING SITE FOR RESIDUE ZN C 407
08
BC7
SOFTWARE
GLU A:357 , GLU A:360 , HOH A:793 , HIS C:138
BINDING SITE FOR RESIDUE ZN A 408
09
BC8
SOFTWARE
HIS D:271 , ACT D:512 , HOH D:780 , NAD D:4377
BINDING SITE FOR RESIDUE ZN D 409
10
BC9
SOFTWARE
HIS D:138 , ACT D:514 , HOH D:693 , HOH D:867
BINDING SITE FOR RESIDUE ZN D 410
11
CC1
SOFTWARE
CAC B:551 , CAC B:552 , CAC B:553 , HIS D:348
BINDING SITE FOR RESIDUE ZN D 411
12
CC5
SOFTWARE
CYS C:46 , THR C:48 , HIS C:67 , PHE C:93 , MET C:141 , CYS C:174 , ZN C:376 , HOH C:956 , NAD C:3377
BINDING SITE FOR RESIDUE ACT C 505
13
CC8
SOFTWARE
ZN B:405 , GLU D:99 , ARG D:113 , ACT D:509
BINDING SITE FOR RESIDUE ACT D 508
14
CC9
SOFTWARE
ASP B:341 , ZN B:405 , LYS D:34 , GLU D:99 , ACT D:508
BINDING SITE FOR RESIDUE ACT D 509
15
DC1
SOFTWARE
HIS C:271 , ZN C:407 , NAD C:3377
BINDING SITE FOR RESIDUE ACT C 510
16
DC2
SOFTWARE
CYS D:46 , THR D:48 , HIS D:67 , PHE D:93 , CYS D:174 , ZN D:376 , HOH D:977 , NAD D:4377
BINDING SITE FOR RESIDUE ACT D 511
17
DC3
SOFTWARE
HIS D:271 , ZN D:409 , HOH D:780 , HOH D:1013
BINDING SITE FOR RESIDUE ACT D 512
18
DC5
SOFTWARE
HIS D:138 , ZN D:410 , HOH D:693
BINDING SITE FOR RESIDUE ACT D 514
19
DC6
SOFTWARE
GLU B:16 , PHE B:61 , ZN B:406 , CAC B:552 , CAC B:553 , HIS D:348 , GLN D:366 , ZN D:411
BINDING SITE FOR RESIDUE CAC B 551
20
DC7
SOFTWARE
GLU B:16 , ZN B:406 , CAC B:551 , CAC B:553 , HIS D:348 , ZN D:411
BINDING SITE FOR RESIDUE CAC B 552
21
DC8
SOFTWARE
GLU B:16 , ZN B:406 , CAC B:551 , CAC B:552 , HOH B:903 , HIS D:348 , ZN D:411
BINDING SITE FOR RESIDUE CAC B 553
22
EC4
SOFTWARE
ARG C:47 , THR C:48 , HIS C:51 , CYS C:174 , THR C:178 , GLY C:201 , GLY C:202 , VAL C:203 , ASP C:223 , LEU C:224 , LYS C:228 , VAL C:268 , ILE C:269 , HIS C:271 , VAL C:292 , GLY C:293 , VAL C:294 , CYS C:317 , PHE C:319 , ARG C:369 , ZN C:407 , ACT C:505 , ACT C:510 , HOH C:770 , HOH C:771 , HOH C:845 , PHE D:309
BINDING SITE FOR RESIDUE NAD C 3377
23
EC5
SOFTWARE
ARG D:47 , THR D:48 , HIS D:51 , CYS D:174 , THR D:178 , GLY D:201 , GLY D:202 , VAL D:203 , ASP D:223 , LEU D:224 , LYS D:228 , VAL D:268 , ILE D:269 , HIS D:271 , VAL D:292 , GLY D:293 , VAL D:294 , CYS D:317 , PHE D:319 , ARG D:369 , ZN D:409 , ACT D:511 , HOH D:737 , HOH D:978
BINDING SITE FOR RESIDUE NAD D 4377
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_024364 (G79A, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024364
G
92
A
ADH7_HUMAN
Polymorphism
1573496
C/D
G
79
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (C:66-80,D:66-80)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH7_HUMAN
79-93
2
-
-
C:66-80
D:66-80
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1d1sa1 (A:1-162,A:339-374)
1b: SCOP_d1d1sb1 (B:1-162,B:339-374)
1c: SCOP_d1d1sc1 (C:1-162,C:339-374)
1d: SCOP_d1d1sd1 (D:1-162,D:339-374)
2a: SCOP_d1d1sa2 (A:163-338)
2b: SCOP_d1d1sb2 (B:163-338)
2c: SCOP_d1d1sc2 (C:163-338)
2d: SCOP_d1d1sd2 (D:163-338)
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Classes
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)
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)
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(
)
Families
(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
1a
d1d1sa1
A:1-162,A:339-374
1b
d1d1sb1
B:1-162,B:339-374
1c
d1d1sc1
C:1-162,C:339-374
1d
d1d1sd1
D:1-162,D:339-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
2a
d1d1sa2
A:163-338
2b
d1d1sb2
B:163-338
2c
d1d1sc2
C:163-338
2d
d1d1sd2
D:163-338
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1d1sA02 (A:179-317)
1b: CATH_1d1sB02 (B:179-317)
1c: CATH_1d1sC02 (C:179-317)
1d: CATH_1d1sD02 (D:179-317)
2a: CATH_1d1sA01 (A:1-178,A:318-374)
2b: CATH_1d1sB01 (B:1-178,B:318-374)
2c: CATH_1d1sC01 (C:1-178,C:318-374)
2d: CATH_1d1sD01 (D:1-178,D:318-374)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1d1sA02
A:179-317
1b
1d1sB02
B:179-317
1c
1d1sC02
C:179-317
1d
1d1sD02
D:179-317
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Human (Homo sapiens)
(30)
2a
1d1sA01
A:1-178,A:318-374
2b
1d1sB01
B:1-178,B:318-374
2c
1d1sC01
C:1-178,C:318-374
2d
1d1sD01
D:1-178,D:318-374
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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