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1D0J
Asym. Unit
Info
Asym.Unit (169 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (85 KB)
Biol.Unit 3 (165 KB)
Biol.Unit 4 (165 KB)
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(1)
Title
:
STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A M4-1BB PEPTIDE
Authors
:
H. Ye, Y. C. Park, M. Kreishman, E. Kieff, H. Wu
Date
:
10 Sep 99 (Deposition) - 08 Mar 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K
Biol. Unit 1: A,B,C,G,H (1x)
Biol. Unit 2: D,E,F,I,J,K (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H,I,J,K (1x)
Biol. Unit 4: A,B,C,D,E,F,G,H,I,J,K (1x)
Keywords
:
B-Sandwich, Protein-Peptide Complex, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ye, Y. C. Park, M. Kreishman, E. Kieff, H. Wu
The Structural Basis For The Recognition Of Diverse Receptor Sequences By Traf2.
Mol. Cell V. 4 321 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE D:447
BINDING SITE FOR RESIDUE ACE I 230
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: MATH (A:351-496,B:351-496,C:351-496,D:35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MATH
PS50144
MATH/TRAF domain profile.
TRAF2_HUMAN
351-496
6
A:351-496
B:351-496
C:351-496
D:351-496
E:351-496
F:351-496
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Exons
(3, 18)
Info
All Exons
Exon 1.16a (A:334-380 | B:334-380 | C:334-380 ...)
Exon 1.18b (A:380-429 | B:380-429 | C:380-429 ...)
Exon 1.19 (A:430-501 | B:430-501 | C:430-501 ...)
View:
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All Exon Boundaries
1: Boundary 1.15b/1.16a
2: Boundary 1.16a/1.18b
3: Boundary 1.18b/1.19
4: Boundary 1.19/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000247668
4a
ENSE00001307288
chr9:
139780970-139780993
24
TRAF2_HUMAN
-
0
0
-
-
1.8
ENST00000247668
8
ENSE00001122187
chr9:
139793165-139793380
216
TRAF2_HUMAN
1-63
63
0
-
-
1.9
ENST00000247668
9
ENSE00001042880
chr9:
139794046-139794124
79
TRAF2_HUMAN
63-89
27
0
-
-
1.10b
ENST00000247668
10b
ENSE00001095643
chr9:
139794874-139794972
99
TRAF2_HUMAN
90-122
33
0
-
-
1.12b
ENST00000247668
12b
ENSE00000870768
chr9:
139802522-139802683
162
TRAF2_HUMAN
123-176
54
0
-
-
1.13b
ENST00000247668
13b
ENSE00000897415
chr9:
139804372-139804446
75
TRAF2_HUMAN
177-201
25
0
-
-
1.14a
ENST00000247668
14a
ENSE00000870769
chr9:
139810993-139811067
75
TRAF2_HUMAN
202-226
25
0
-
-
1.15b
ENST00000247668
15b
ENSE00000870770
chr9:
139814686-139814967
282
TRAF2_HUMAN
227-320
94
0
-
-
1.16a
ENST00000247668
16a
ENSE00000870771
chr9:
139815490-139815667
178
TRAF2_HUMAN
321-380
60
6
A:334-380
B:334-380
C:334-380
D:334-380
E:334-380
F:334-380
47
47
47
47
47
47
1.18b
ENST00000247668
18b
ENSE00000985052
chr9:
139818304-139818452
149
TRAF2_HUMAN
380-429
50
6
A:380-429
B:380-429
C:380-429
D:380-429
E:380-429
F:380-429
50
50
50
50
50
50
1.19
ENST00000247668
19
ENSE00001556395
chr9:
139820135-139821059
925
TRAF2_HUMAN
430-501
72
6
A:430-501
B:430-501
C:430-501
D:430-501
E:430-501
F:430-501
72
72
72
72
72
72
[
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SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1d0ja1 (A:350-501)
1b: SCOP_d1d0jb1 (B:350-501)
1c: SCOP_d1d0jc1 (C:350-501)
1d: SCOP_d1d0jd1 (D:350-501)
1e: SCOP_d1d0je1 (E:350-501)
1f: SCOP_d1d0jf1 (F:350-501)
2a: SCOP_d1d0ja2 (A:334-349)
2b: SCOP_d1d0jb2 (B:334-349)
2c: SCOP_d1d0jc2 (C:334-349)
2d: SCOP_d1d0jd2 (D:334-349)
2e: SCOP_d1d0je2 (E:334-349)
2f: SCOP_d1d0jf2 (F:334-349)
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Protein Domains
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Organisms
(
)
(
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Class
:
All beta proteins
(24004)
Fold
:
TRAF domain-like
(34)
Superfamily
:
TRAF domain-like
(34)
Family
:
MATH domain
(26)
Protein domain
:
TNF receptor associated factor 2 (TRAF2)
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d1d0ja1
A:350-501
1b
d1d0jb1
B:350-501
1c
d1d0jc1
C:350-501
1d
d1d0jd1
D:350-501
1e
d1d0je1
E:350-501
1f
d1d0jf1
F:350-501
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Trimerization domain of TRAF
(15)
Family
:
Trimerization domain of TRAF
(15)
Protein domain
:
TRAF2
(10)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d1d0ja2
A:334-349
2b
d1d0jb2
B:334-349
2c
d1d0jc2
C:334-349
2d
d1d0jd2
D:334-349
2e
d1d0je2
E:334-349
2f
d1d0jf2
F:334-349
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1d0jA00 (A:334-501)
1b: CATH_1d0jB00 (B:334-501)
1c: CATH_1d0jC00 (C:334-501)
1d: CATH_1d0jD00 (D:334-501)
1e: CATH_1d0jE00 (E:334-501)
1f: CATH_1d0jF00 (F:334-501)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A
(23)
Homologous Superfamily
:
Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A
(23)
Human (Homo sapiens)
(21)
1a
1d0jA00
A:334-501
1b
1d0jB00
B:334-501
1c
1d0jC00
C:334-501
1d
1d0jD00
D:334-501
1e
1d0jE00
E:334-501
1f
1d0jF00
F:334-501
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (169 KB)
Header - Asym.Unit
Biol.Unit 1 (83 KB)
Header - Biol.Unit 1
Biol.Unit 2 (85 KB)
Header - Biol.Unit 2
Biol.Unit 3 (165 KB)
Header - Biol.Unit 3
Biol.Unit 4 (165 KB)
Header - Biol.Unit 4
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