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1D0I
Asym. Unit
Info
Asym.Unit (646 KB)
Biol.Unit 1 (639 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM STREPTOMYCES COELICOLOR COMPLEXED WITH PHOSPHATE IONS
Authors
:
A. W. Roszak, T. Krell, I. S. Hunter, J. R. Coggins, A. J. Lapthorn
Date
:
10 Sep 99 (Deposition) - 13 Sep 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Type Ii Dehydroquinase, Shikimate Pathway, Dodecameric Quaternary Structure, Tetrahedral Symmetry, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. W. Roszak, D. A. Robinson, T. Krell, I. S. Hunter, M. Fredrickson, C. Abell, J. R. Coggins, A. J. Lapthorn
The Structure And Mechanism Of The Type Ii Dehydroquinase From Streptomyces Coelicolor.
Structure V. 10 493 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 20)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
1i: PHOSPHATE ION (PO4i)
1j: PHOSPHATE ION (PO4j)
1k: PHOSPHATE ION (PO4k)
1l: PHOSPHATE ION (PO4l)
1m: PHOSPHATE ION (PO4m)
1n: PHOSPHATE ION (PO4n)
1o: PHOSPHATE ION (PO4o)
1p: PHOSPHATE ION (PO4p)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
2b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
2c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
2d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
16
Ligand/Ion
PHOSPHATE ION
2
TRS
4
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:28 , ASN A:79 , HIS A:106 , ILE A:107 , SER A:108 , HOH A:3392 , HOH A:3454
BINDING SITE FOR RESIDUE PO4 A 3001
02
AC2
SOFTWARE
HIS A:58 , GLY A:60 , HOH A:3303 , HOH A:3325 , HOH A:3430 , HOH A:3432 , HIS B:58 , GLY B:60 , HIS C:58 , GLY C:60
BINDING SITE FOR RESIDUE PO4 A 3002
03
AC3
SOFTWARE
TYR B:28 , ASN B:79 , HIS B:106 , ILE B:107 , SER B:108 , HOH B:3018 , HOH B:3056
BINDING SITE FOR RESIDUE PO4 B 3003
04
AC4
SOFTWARE
TYR C:28 , ASN C:79 , HIS C:106 , ILE C:107 , SER C:108 , HOH C:367
BINDING SITE FOR RESIDUE PO4 C 3004
05
AC5
SOFTWARE
TYR D:28 , ASN D:79 , HIS D:106 , ILE D:107 , SER D:108 , HOH D:3330
BINDING SITE FOR RESIDUE PO4 D 3005
06
AC6
SOFTWARE
HIS D:58 , GLY D:60 , HOH D:3421 , HIS E:58 , GLY E:60 , HOH E:3088 , HOH E:3108 , HOH E:3160 , HIS F:58 , GLY F:60
BINDING SITE FOR RESIDUE PO4 E 3006
07
AC7
SOFTWARE
TYR E:28 , ASN E:79 , HIS E:106 , ILE E:107 , SER E:108 , HOH E:3032 , HOH E:3066
BINDING SITE FOR RESIDUE PO4 E 3007
08
AC8
SOFTWARE
TYR F:28 , ASN F:79 , HIS F:106 , ILE F:107 , SER F:108 , HOH F:3028 , HOH F:3041
BINDING SITE FOR RESIDUE PO4 F 3008
09
AC9
SOFTWARE
TYR G:28 , ASN G:79 , HIS G:106 , ILE G:107 , SER G:108 , HOH G:3368 , HOH G:3456 , HOH G:3485
BINDING SITE FOR RESIDUE PO4 G 3009
10
BC1
SOFTWARE
HIS G:58 , GLY G:60 , HOH G:3425 , HOH G:3447 , HOH G:3449 , HIS H:58 , GLY H:60 , HIS I:58 , GLY I:60 , HOH I:3116
BINDING SITE FOR RESIDUE PO4 G 3010
11
BC2
SOFTWARE
TYR H:28 , ASN H:79 , ALA H:81 , HIS H:106 , ILE H:107 , SER H:108 , HOH H:3038
BINDING SITE FOR RESIDUE PO4 H 3011
12
BC3
SOFTWARE
TYR I:28 , ASN I:79 , HIS I:106 , ILE I:107 , SER I:108 , HOH I:3062 , HOH I:3066
BINDING SITE FOR RESIDUE PO4 I 3012
13
BC4
SOFTWARE
TYR J:28 , ASN J:79 , HIS J:106 , ILE J:107 , SER J:108 , HOH J:307 , HOH J:433
BINDING SITE FOR RESIDUE PO4 J 3013
14
BC5
SOFTWARE
HIS J:58 , GLY J:60 , HIS K:58 , GLY K:60 , HOH K:3099 , HOH K:3121 , HIS L:58 , GLY L:60
BINDING SITE FOR RESIDUE PO4 K 3014
15
BC6
SOFTWARE
TYR K:28 , ASN K:79 , ALA K:81 , HIS K:106 , ILE K:107 , SER K:108 , HOH K:3047
BINDING SITE FOR RESIDUE PO4 K 3015
16
BC7
SOFTWARE
TYR L:28 , ASN L:79 , HIS L:106 , ILE L:107 , SER L:108 , HOH L:3024
BINDING SITE FOR RESIDUE PO4 L 3016
17
BC8
SOFTWARE
GLU A:59 , THR A:86 , SER A:87 , GLU B:59 , THR B:86 , SER B:87 , GLU C:59 , THR C:86 , SER C:87
BINDING SITE FOR RESIDUE TRS A 3301
18
BC9
SOFTWARE
GLU D:59 , THR D:86 , SER D:87 , GLU E:59 , THR E:86 , SER E:87 , GLU F:59 , THR F:86 , SER F:87
BINDING SITE FOR RESIDUE TRS D 3302
19
CC1
SOFTWARE
GLU G:59 , THR G:86 , SER G:87 , GLU H:59 , THR H:86 , SER H:87 , GLU I:59 , THR I:86 , SER I:87
BINDING SITE FOR RESIDUE TRS G 3303
20
CC2
SOFTWARE
GLU J:59 , THR J:86 , SER J:87 , GLU K:59 , THR K:86 , SER K:87 , GLU L:59 , THR L:86 , SER L:87
BINDING SITE FOR RESIDUE TRS J 3304
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: DEHYDROQUINASE_II (A:12-29,B:12-29,C:12-29,D:12-29,E:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEHYDROQUINASE_II
PS01029
Dehydroquinase class II signature.
AROQ_STRCO
13-30
12
A:12-29
B:12-29
C:12-29
D:12-29
E:12-29
F:12-29
G:12-29
H:12-29
I:12-29
J:12-29
K:12-29
L:12-29
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1d0ia_ (A:)
1b: SCOP_d1d0ib_ (B:)
1c: SCOP_d1d0ic_ (C:)
1d: SCOP_d1d0id_ (D:)
1e: SCOP_d1d0ie_ (E:)
1f: SCOP_d1d0if_ (F:)
1g: SCOP_d1d0ig_ (G:)
1h: SCOP_d1d0ih_ (H:)
1i: SCOP_d1d0ii_ (I:)
1j: SCOP_d1d0ij_ (J:)
1k: SCOP_d1d0ik_ (K:)
1l: SCOP_d1d0il_ (L:)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Type II 3-dehydroquinate dehydratase
(40)
Family
:
Type II 3-dehydroquinate dehydratase
(38)
Protein domain
:
Type II 3-dehydroquinate dehydratase
(20)
Streptomyces coelicolor [TaxId: 1902]
(4)
1a
d1d0ia_
A:
1b
d1d0ib_
B:
1c
d1d0ic_
C:
1d
d1d0id_
D:
1e
d1d0ie_
E:
1f
d1d0if_
F:
1g
d1d0ig_
G:
1h
d1d0ih_
H:
1i
d1d0ii_
I:
1j
d1d0ij_
J:
1k
d1d0ik_
K:
1l
d1d0il_
L:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1d0iA00 (A:1-150)
1b: CATH_1d0iB00 (B:1-150)
1c: CATH_1d0iC00 (C:1-150)
1d: CATH_1d0iI00 (I:1-150)
1e: CATH_1d0iJ00 (J:1-150)
1f: CATH_1d0iD00 (D:1-151)
1g: CATH_1d0iF00 (F:1-151)
1h: CATH_1d0iG00 (G:1-151)
1i: CATH_1d0iK00 (K:1-151)
1j: CATH_1d0iL00 (L:1-151)
1k: CATH_1d0iE00 (E:1-152)
1l: CATH_1d0iH00 (H:1-153)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.9100, no name defined]
(22)
Streptomyces coelicolor. Organism_taxid: 1902.
(7)
1a
1d0iA00
A:1-150
1b
1d0iB00
B:1-150
1c
1d0iC00
C:1-150
1d
1d0iI00
I:1-150
1e
1d0iJ00
J:1-150
1f
1d0iD00
D:1-151
1g
1d0iF00
F:1-151
1h
1d0iG00
G:1-151
1i
1d0iK00
K:1-151
1j
1d0iL00
L:1-151
1k
1d0iE00
E:1-152
1l
1d0iH00
H:1-153
[
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Pfam Domains
(0, 0)
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