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1CZV
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C2 DOMAIN OF HUMAN COAGULATION FACTOR V: DIMERIC CRYSTAL FORM
Authors
:
S. Macedo-Ribeiro, W. Bode, R. Huber, W. H. Kane, P. Fuentes-Prior
Date
:
07 Sep 99 (Deposition) - 26 Nov 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Coagulation, Membrane-Binding, Discoidin Family, Calcium- Independent, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Macedo-Ribeiro, W. Bode, R. Huber, M. A. Quinn-Allen, S. W. Kim, T. L. Ortel, G. P. Bourenkov, H. D. Bartunik, M. T. Stubbs, W. H. Kane, P. Fuentes-Prior
Crystal Structures Of The Membrane-Binding C2 Domain Of Human Coagulation Factor V.
Nature V. 402 434 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_032701 (R37C, chain A/B, )
2: VAR_017329 (R37H, chain A/B, )
3: VAR_021302 (M83T, chain A/B, )
4: VAR_034603 (K120R, chain A/B, )
5: VAR_013899 (D157G, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_032701
R
2102
C
FA5_HUMAN
Disease (FA5D)
---
A/B
R
37
C
2
UniProt
VAR_017329
R
2102
H
FA5_HUMAN
Disease (THPH2)
---
A/B
R
37
H
3
UniProt
VAR_021302
M
2148
T
FA5_HUMAN
Polymorphism
9332701
A/B
M
83
T
4
UniProt
VAR_034603
K
2185
R
FA5_HUMAN
Polymorphism
6679078
A/B
K
120
R
5
UniProt
VAR_013899
D
2222
G
FA5_HUMAN
Polymorphism
6027
A/B
D
157
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: FA58C_3 (-|A:1-156,B:1-156)
2: FA58C_1 (-|A:46-75,B:46-75)
3: FA58C_2 (-|A:140-156,B:140-156)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
FA5_HUMAN
1907-2061
2066-2221
2
-
A:1-156
B:1-156
2
FA58C_1
PS01285
Coagulation factors 5/8 type C domain (FA58C) signature 1.
FA5_HUMAN
1947-1980
2111-2140
2
-
A:46-75
B:46-75
3
FA58C_2
PS01286
Coagulation factors 5/8 type C domain (FA58C) signature 2.
FA5_HUMAN
2045-2061
2205-2221
2
-
A:140-156
B:140-156
[
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Exons
(3, 6)
Info
All Exons
Exon 1.23 (A:1-50 | B:1-50)
Exon 1.24b (A:51-111 | B:51-111)
Exon 1.25 (A:112-159 | B:112-159)
View:
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All Exon Boundaries
1: Boundary 1.22/1.23
2: Boundary 1.23/1.24b
3: Boundary 1.24b/1.25
4: Boundary 1.25/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000367797
1
ENSE00001673787
chr1:
169555826-169555467
360
FA5_HUMAN
1-53
53
0
-
-
1.2
ENST00000367797
2
ENSE00000789613
chr1:
169551760-169551669
92
FA5_HUMAN
53-84
32
0
-
-
1.3
ENST00000367797
3
ENSE00000789612
chr1:
169541581-169541459
123
FA5_HUMAN
84-125
42
0
-
-
1.4
ENST00000367797
4
ENSE00000789611
chr1:
169530004-169529792
213
FA5_HUMAN
125-196
72
0
-
-
1.5
ENST00000367797
5
ENSE00000789610
chr1:
169528534-169528391
144
FA5_HUMAN
196-244
49
0
-
-
1.6
ENST00000367797
6
ENSE00001435704
chr1:
169526105-169525884
222
FA5_HUMAN
244-318
75
0
-
-
1.7
ENST00000367797
7
ENSE00001435673
chr1:
169524585-169524420
166
FA5_HUMAN
318-373
56
0
-
-
1.8
ENST00000367797
8
ENSE00000789607
chr1:
169521972-169521795
178
FA5_HUMAN
373-432
60
0
-
-
1.9
ENST00000367797
9
ENSE00000789606
chr1:
169519977-169519878
100
FA5_HUMAN
433-466
34
0
-
-
1.10
ENST00000367797
10
ENSE00000789605
chr1:
169519253-169519039
215
FA5_HUMAN
466-537
72
0
-
-
1.11
ENST00000367797
11
ENSE00000789604
chr1:
169515830-169515680
151
FA5_HUMAN
538-588
51
0
-
-
1.12b
ENST00000367797
12b
ENSE00000789603
chr1:
169513746-169513534
213
FA5_HUMAN
588-659
72
0
-
-
1.13
ENST00000367797
13
ENSE00000814494
chr1:
169512352-169509532
2821
FA5_HUMAN
659-1599
941
0
-
-
1.14
ENST00000367797
14
ENSE00000814495
chr1:
169505918-169505744
175
FA5_HUMAN
1599-1657
59
0
-
-
1.15
ENST00000367797
15
ENSE00000814496
chr1:
169500260-169500024
237
FA5_HUMAN
1658-1736
79
0
-
-
1.16
ENST00000367797
16
ENSE00001376235
chr1:
169499056-169498846
211
FA5_HUMAN
1737-1807
71
0
-
-
1.17
ENST00000367797
17
ENSE00001388919
chr1:
169497332-169497153
180
FA5_HUMAN
1807-1867
61
0
-
-
1.18
ENST00000367797
18
ENSE00001367181
chr1:
169495255-169495139
117
FA5_HUMAN
1867-1906
40
0
-
-
1.19
ENST00000367797
19
ENSE00001168291
chr1:
169494146-169494075
72
FA5_HUMAN
1906-1930
25
0
-
-
1.20
ENST00000367797
20
ENSE00001168281
chr1:
169493142-169493039
104
FA5_HUMAN
1930-1964
35
0
-
-
1.21
ENST00000367797
21
ENSE00000814502
chr1:
169492590-169492435
156
FA5_HUMAN
1965-2016
52
0
-
-
1.22
ENST00000367797
22
ENSE00000814503
chr1:
169489902-169489758
145
FA5_HUMAN
2017-2065
49
0
-
-
1.23
ENST00000367797
23
ENSE00001168273
chr1:
169487801-169487650
152
FA5_HUMAN
2065-2115
51
2
A:1-50
B:1-50
50
50
1.24b
ENST00000367797
24b
ENSE00000814505
chr1:
169484864-169484682
183
FA5_HUMAN
2116-2176
61
2
A:51-111
B:51-111
61
61
1.25
ENST00000367797
25
ENSE00001627321
chr1:
169483697-169483404
294
FA5_HUMAN
2177-2224
48
2
A:112-159
B:112-159
48
48
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1czva_ (A:)
1b: SCOP_d1czvb_ (B:)
View:
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Classes
(
)
(
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Folds
(
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(
)
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(
)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
(17)
Protein domain
:
C2 domain of factor V
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1czva_
A:
1b
d1czvb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1czvA00 (A:1-159)
1b: CATH_1czvB00 (B:1-159)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
1czvA00
A:1-159
1b
1czvB00
B:1-159
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Pfam Domains
(0, 0)
Info
all PFAM domains
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