PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1CXW
Asym. Unit
Info
Asym.Unit (746 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(50 )
Title
:
THE SECOND TYPE II MODULE FROM HUMAN MATRIX METALLOPROTEINASE 2
Authors
:
K. Briknarova, A. Grishaev, L. Banyai, H. Tordai, L. Patthy, M. Llinas
Date
:
31 Aug 99 (Deposition) - 12 Nov 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (50 x)
Keywords
:
Beta Sheet, Alpha Helix, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Briknarova, A. Grishaev, L. Banyai, H. Tordai, L. Patthy, M. Llinas
The Second Type Ii Module From Human Matrix Metalloproteinase 2: Structure, Function And Dynamics.
Structure Fold. Des. V. 7 1235 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: FN2_2 (-|A:10-58|-)
2: FN2_1 (-|A:15-56|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN2_2
PS51092
Fibronectin type-II collagen-binding domain profile.
MMP2_HUMAN
228-276
286-334
344-392
1
-
A:10-58
-
2
FN2_1
PS00023
Fibronectin type-II collagen-binding domain signature.
MMP2_HUMAN
233-274
291-332
349-390
1
-
A:15-56
-
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.6 (A:1-2)
Exon 1.7 (A:2-60)
Exon 1.8 (A:60-60)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000219070
1
ENSE00001045278
chr16:
55512883-55513544
662
MMP2_HUMAN
1-51
51
0
-
-
1.3
ENST00000219070
3
ENSE00000684353
chr16:
55516821-55517047
227
MMP2_HUMAN
52-127
76
0
-
-
1.4
ENST00000219070
4
ENSE00000684376
chr16:
55517928-55518076
149
MMP2_HUMAN
127-177
51
0
-
-
1.5
ENST00000219070
5
ENSE00000684379
chr16:
55519211-55519339
129
MMP2_HUMAN
177-220
44
0
-
-
1.6
ENST00000219070
6
ENSE00000684383
chr16:
55519516-55519689
174
MMP2_HUMAN
220-278
59
1
A:1-2
2
1.7
ENST00000219070
7
ENSE00000396666
chr16:
55522455-55522628
174
MMP2_HUMAN
278-336
59
1
A:2-60
59
1.8
ENST00000219070
8
ENSE00000684389
chr16:
55523563-55523736
174
MMP2_HUMAN
336-394
59
1
A:60-60
1
1.9
ENST00000219070
9
ENSE00001170187
chr16:
55525713-55525868
156
MMP2_HUMAN
394-446
53
0
-
-
1.10
ENST00000219070
10
ENSE00000684415
chr16:
55527070-55527205
136
MMP2_HUMAN
446-491
46
0
-
-
1.11
ENST00000219070
11
ENSE00000684425
chr16:
55530838-55530974
137
MMP2_HUMAN
491-537
47
0
-
-
1.12
ENST00000219070
12
ENSE00000684426
chr16:
55532201-55532360
160
MMP2_HUMAN
537-590
54
0
-
-
1.13
ENST00000219070
13
ENSE00000684427
chr16:
55536691-55536800
110
MMP2_HUMAN
590-627
38
0
-
-
1.14b
ENST00000219070
14b
ENSE00001931477
chr16:
55539251-55540603
1353
MMP2_HUMAN
627-660
34
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1cxwa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Fibronectin type II module
(13)
Protein domain
:
Gelatinase A (MMP-2) type II modules
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1cxwa_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1cxwA00 (A:1-60)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Seminal Fluid Protein PDC-109 (Domain B)
(33)
Homologous Superfamily
:
[code=2.10.10.10, no name defined]
(13)
Human (Homo sapiens)
(11)
1a
1cxwA00
A:1-60
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (746 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1CXW
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help