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1CX8
Biol. Unit 3
Info
Asym.Unit (827 KB)
Biol.Unit 1 (211 KB)
Biol.Unit 2 (214 KB)
Biol.Unit 3 (213 KB)
Biol.Unit 4 (209 KB)
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Title
:
CRYSTAL STRUCTURE OF THE ECTODOMAIN OF HUMAN TRANSFERRIN RECEPTOR
Authors
:
C. M. Lawrence, S. Ray, M. Babyonyshev, R. Galluser, D. Borhani, S. C. Ha
Date
:
28 Aug 99 (Deposition) - 09 Sep 99 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Human Transferrin Receptor, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Lawrence, S. Ray, M. Babyonyshev, R. Galluser, D. W. Borhani, S. C. Harrison
Crystal Structure Of The Ectodomain Of Human Transferrin Receptor.
Science V. 286 779 1999
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
1x: N-ACETYL-D-GLUCOSAMINE (NAGx)
2a: SAMARIUM (III) ION (SMa)
2b: SAMARIUM (III) ION (SMb)
2c: SAMARIUM (III) ION (SMc)
2d: SAMARIUM (III) ION (SMd)
2e: SAMARIUM (III) ION (SMe)
2f: SAMARIUM (III) ION (SMf)
2g: SAMARIUM (III) ION (SMg)
2h: SAMARIUM (III) ION (SMh)
2i: SAMARIUM (III) ION (SMi)
2j: SAMARIUM (III) ION (SMj)
2k: SAMARIUM (III) ION (SMk)
2l: SAMARIUM (III) ION (SMl)
2m: SAMARIUM (III) ION (SMm)
2n: SAMARIUM (III) ION (SMn)
2o: SAMARIUM (III) ION (SMo)
2p: SAMARIUM (III) ION (SMp)
2q: SAMARIUM (III) ION (SMq)
2r: SAMARIUM (III) ION (SMr)
2s: SAMARIUM (III) ION (SMs)
2t: SAMARIUM (III) ION (SMt)
2u: SAMARIUM (III) ION (SMu)
2v: SAMARIUM (III) ION (SMv)
2w: SAMARIUM (III) ION (SMw)
2x: SAMARIUM (III) ION (SMx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SM
-1
Ligand/Ion
SAMARIUM (III) ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: BC4 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: EC1 (SOFTWARE)
08: EC2 (SOFTWARE)
09: EC3 (SOFTWARE)
10: EC4 (SOFTWARE)
11: EC5 (SOFTWARE)
12: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC4
SOFTWARE
ASN E:251
BINDING SITE FOR RESIDUE NAG E 761
02
BC5
SOFTWARE
PHE E:187 , ASN E:317 , GLU E:383 , TRP F:641 , PHE F:760
BINDING SITE FOR RESIDUE NAG E 762
03
BC6
SOFTWARE
ASN E:727
BINDING SITE FOR RESIDUE NAG E 763
04
BC7
SOFTWARE
ASN F:251
BINDING SITE FOR RESIDUE NAG F 761
05
BC8
SOFTWARE
TRP E:641 , PHE E:760 , ASN F:317 , GLU F:383
BINDING SITE FOR RESIDUE NAG F 762
06
BC9
SOFTWARE
ASN F:727 , LEU F:730
BINDING SITE FOR RESIDUE NAG F 763
07
EC1
SOFTWARE
ASP E:648 , ASP E:757
BINDING SITE FOR RESIDUE SM E 764
08
EC2
SOFTWARE
ASP E:307 , THR E:310 , PRO E:311 , GLU E:465 , GLU E:468
BINDING SITE FOR RESIDUE SM E 765
09
EC3
SOFTWARE
GLU E:575 , GLU E:578
BINDING SITE FOR RESIDUE SM E 766
10
EC4
SOFTWARE
ASP F:648 , ASP F:757
BINDING SITE FOR RESIDUE SM F 764
11
EC5
SOFTWARE
ASP F:307 , THR F:310 , PRO F:311 , GLU F:465 , GLU F:468
BINDING SITE FOR RESIDUE SM F 765
12
EC6
SOFTWARE
GLU F:575 , GLU F:578
BINDING SITE FOR RESIDUE SM F 766
[
close Site info
]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_012737 (S142S, chain E/F, )
2: VAR_051806 (L212V, chain E/F, )
3: VAR_051807 (G420S, chain E/F, )
4: VAR_051808 (R677H, chain E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012737
G
142
S
TFR1_HUMAN
Polymorphism
3817672
E/F
S
142
S
2
UniProt
VAR_051806
L
212
V
TFR1_HUMAN
Polymorphism
41301381
E/F
L
212
V
3
UniProt
VAR_051807
G
420
S
TFR1_HUMAN
Polymorphism
41295879
E/F
G
420
S
4
UniProt
VAR_051808
R
677
H
TFR1_HUMAN
Polymorphism
41298067
E/F
R
677
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d1cx8a1 (A:609-760)
1b: SCOP_d1cx8g1 (G:609-760)
1c: SCOP_d1cx8h1 (H:609-760)
1d: SCOP_d1cx8b1 (B:609-760)
1e: SCOP_d1cx8c1 (C:609-760)
1f: SCOP_d1cx8d1 (D:609-760)
1g: SCOP_d1cx8e1 (E:609-760)
1h: SCOP_d1cx8f1 (F:609-760)
2a: SCOP_d1cx8a3 (A:122-189,A:383-608)
2b: SCOP_d1cx8g3 (G:122-189,G:383-608)
2c: SCOP_d1cx8h3 (H:122-189,H:383-608)
2d: SCOP_d1cx8b3 (B:122-189,B:383-608)
2e: SCOP_d1cx8c3 (C:122-189,C:383-608)
2f: SCOP_d1cx8d3 (D:122-189,D:383-608)
2g: SCOP_d1cx8e3 (E:122-189,E:383-608)
2h: SCOP_d1cx8f3 (F:122-189,F:383-608)
3a: SCOP_d1cx8a2 (A:190-382)
3b: SCOP_d1cx8g2 (G:190-382)
3c: SCOP_d1cx8h2 (H:190-382)
3d: SCOP_d1cx8b2 (B:190-382)
3e: SCOP_d1cx8c2 (C:190-382)
3f: SCOP_d1cx8d2 (D:190-382)
3g: SCOP_d1cx8e2 (E:190-382)
3h: SCOP_d1cx8f2 (F:190-382)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
N-cbl like
(37)
Superfamily
:
Transferrin receptor-like dimerisation domain
(18)
Family
:
Transferrin receptor-like dimerisation domain
(18)
Protein domain
:
Transferrin receptor ectodomain, C-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1cx8a1
A:609-760
1b
d1cx8g1
G:609-760
1c
d1cx8h1
H:609-760
1d
d1cx8b1
B:609-760
1e
d1cx8c1
C:609-760
1f
d1cx8d1
D:609-760
1g
d1cx8e1
E:609-760
1h
d1cx8f1
F:609-760
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
FolH catalytic domain-like
(18)
Protein domain
:
Transferrin receptor ectodomain, protease-like domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
2a
d1cx8a3
A:122-189,A:383-608
2b
d1cx8g3
G:122-189,G:383-608
2c
d1cx8h3
H:122-189,H:383-608
2d
d1cx8b3
B:122-189,B:383-608
2e
d1cx8c3
C:122-189,C:383-608
2f
d1cx8d3
D:122-189,D:383-608
2g
d1cx8e3
E:122-189,E:383-608
2h
d1cx8f3
F:122-189,F:383-608
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
PA domain
(18)
Family
:
PA domain
(18)
Protein domain
:
Transferrin receptor ectodomain, apical domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(4)
3a
d1cx8a2
A:190-382
3b
d1cx8g2
G:190-382
3c
d1cx8h2
H:190-382
3d
d1cx8b2
B:190-382
3e
d1cx8c2
C:190-382
3f
d1cx8d2
D:190-382
3g
d1cx8e2
E:190-382
3h
d1cx8f2
F:190-382
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1cx8A01 (A:122-194,A:380-613)
1b: CATH_1cx8B01 (B:122-194,B:380-613)
1c: CATH_1cx8C01 (C:122-194,C:380-613)
1d: CATH_1cx8D01 (D:122-194,D:380-613)
1e: CATH_1cx8E01 (E:122-194,E:380-613)
1f: CATH_1cx8F01 (F:122-194,F:380-613)
1g: CATH_1cx8G01 (G:122-194,G:380-613)
1h: CATH_1cx8H01 (H:122-194,H:380-613)
2a: CATH_1cx8A02 (A:197-377)
2b: CATH_1cx8H02 (H:197-377)
2c: CATH_1cx8B02 (B:197-377)
2d: CATH_1cx8C02 (C:197-377)
2e: CATH_1cx8D02 (D:197-377)
2f: CATH_1cx8E02 (E:197-377)
2g: CATH_1cx8F02 (F:197-377)
2h: CATH_1cx8G02 (G:197-377)
3a: CATH_1cx8A03 (A:614-755)
3b: CATH_1cx8H03 (H:614-755)
3c: CATH_1cx8B03 (B:614-755)
3d: CATH_1cx8C03 (C:614-755)
3e: CATH_1cx8D03 (D:614-755)
3f: CATH_1cx8E03 (E:614-755)
3g: CATH_1cx8F03 (F:614-755)
3h: CATH_1cx8G03 (G:614-755)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Human (Homo sapiens)
(10)
1a
1cx8A01
A:122-194,A:380-613
1b
1cx8B01
B:122-194,B:380-613
1c
1cx8C01
C:122-194,C:380-613
1d
1cx8D01
D:122-194,D:380-613
1e
1cx8E01
E:122-194,E:380-613
1f
1cx8F01
F:122-194,F:380-613
1g
1cx8G01
G:122-194,G:380-613
1h
1cx8H01
H:122-194,H:380-613
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Glucose Oxidase; domain 1
(52)
Homologous Superfamily
:
[code=3.50.30.30, no name defined]
(6)
Human (Homo sapiens)
(2)
2a
1cx8A02
A:197-377
2b
1cx8H02
H:197-377
2c
1cx8B02
B:197-377
2d
1cx8C02
C:197-377
2e
1cx8D02
D:197-377
2f
1cx8E02
E:197-377
2g
1cx8F02
F:197-377
2h
1cx8G02
G:197-377
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Transcription Elongation Factor S-II; Chain A
(14)
Homologous Superfamily
:
[code=1.20.930.40, no name defined]
(3)
Human (Homo sapiens)
(2)
3a
1cx8A03
A:614-755
3b
1cx8H03
H:614-755
3c
1cx8B03
B:614-755
3d
1cx8C03
C:614-755
3e
1cx8D03
D:614-755
3f
1cx8E03
E:614-755
3g
1cx8F03
F:614-755
3h
1cx8G03
G:614-755
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (827 KB)
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