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1CVS
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (209 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DIMERIC FGF2-FGFR1 COMPLEX
Authors
:
A. N. Plotnikov, J. Schlessinger, S. R. Hubbard, M. Mohammadi
Date
:
24 Aug 99 (Deposition) - 28 Jan 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (2x)
Keywords
:
Fgf, Fgfr, Immunoglobulin-Like, Signal Transduction, Dimerization, Growth Factor/Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. N. Plotnikov, J. Schlessinger, S. R. Hubbard, M. Mohammadi
Structural Basis For Fgf Receptor Dimerization And Activation.
Cell(Cambridge, Mass. ) V. 98 641 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS B:26 , LYS B:135 , LYS D:163 , LYS D:172
BINDING SITE FOR RESIDUE SO4 B 1
2
AC2
SOFTWARE
LYS B:119 , ARG B:120 , LYS B:125
BINDING SITE FOR RESIDUE SO4 B 2
3
AC3
SOFTWARE
ASN A:27 , LYS A:119 , ARG A:120 , LYS A:125
BINDING SITE FOR RESIDUE SO4 A 3
4
AC4
SOFTWARE
LYS A:26 , LYS A:135 , ASP D:218
BINDING SITE FOR RESIDUE SO4 A 4
[
close Site info
]
SAPs(SNPs)/Variants
(30, 59)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_070851 (L165S, chain C/D, )
02: VAR_017887 (A167S, chain C/D, )
03: VAR_072995 (V174A, chain C/D, )
04: VAR_030974 (C178S, chain C/D, )
05: VAR_070852 (L191S, chain C/D, )
06: VAR_030975 (W213G, chain C/D, )
07: VAR_030976 (D224H, chain C/D, )
08: VAR_069289 (Y228D, chain C/D, )
09: VAR_030977 (G237D, chain C/D, )
10: VAR_030978 (G237S, chain C/D, )
11: VAR_069290 (I239T, chain C/D, )
12: VAR_030979 (L245P, chain C/D, )
13: VAR_069291 (R250Q, chain C/D, )
14: VAR_030980 (R250W, chain C/D, )
15: VAR_004111 (P252R, chain C/D, )
16: VAR_042202 (P252T, chain C/D, )
17: VAR_030981 (R254Q, chain C/D, )
18: VAR_030982 (G270D, chain C/D, )
19: VAR_030983 (V273M, chain C/D, )
20: VAR_030984 (E274G, chain C/D, )
21: VAR_017888 (C277Y, chain C/D, )
22: VAR_030985 (P283R, chain C/D, )
23: VAR_030986 (I300T, chain C, )
24: VAR_030987 (N330I, chain C/D, )
25: VAR_030988 (S332C, chain C/D, )
26: VAR_030989 (Y339C, chain C/D, )
27: VAR_069954 (L342S, chain C/D, )
28: VAR_030990 (A343V, chain C/D, )
29: VAR_030991 (S346C, chain C/D, )
30: VAR_069955 (G348R, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_070851
L
165
S
FGFR1_HUMAN
Disease (HRTFDS)
---
C/D
L
165
S
02
UniProt
VAR_017887
A
167
S
FGFR1_HUMAN
Disease (HH2)
---
C/D
A
167
S
03
UniProt
VAR_072995
V
174
A
FGFR1_HUMAN
Disease (HH2)
---
C/D
V
174
A
04
UniProt
VAR_030974
C
178
S
FGFR1_HUMAN
Disease (HH2)
---
C/D
C
178
S
05
UniProt
VAR_070852
L
191
S
FGFR1_HUMAN
Disease (HRTFDS)
---
C/D
L
191
S
06
UniProt
VAR_030975
W
213
G
FGFR1_HUMAN
Polymorphism
17851623
C/D
W
213
G
07
UniProt
VAR_030976
D
224
H
FGFR1_HUMAN
Disease (HH2)
---
C/D
D
224
H
08
UniProt
VAR_069289
Y
228
D
FGFR1_HUMAN
Disease (HH2)
---
C/D
Y
228
D
09
UniProt
VAR_030977
G
237
D
FGFR1_HUMAN
Disease (HH2)
---
C/D
G
237
D
10
UniProt
VAR_030978
G
237
S
FGFR1_HUMAN
Disease (HH2)
---
C/D
G
237
S
11
UniProt
VAR_069290
I
239
T
FGFR1_HUMAN
Disease (HH2)
---
C/D
I
239
T
12
UniProt
VAR_030979
L
245
P
FGFR1_HUMAN
Disease (HH2)
---
C/D
L
245
P
13
UniProt
VAR_069291
R
250
Q
FGFR1_HUMAN
Disease (HH2)
---
C/D
R
250
Q
14
UniProt
VAR_030980
R
250
W
FGFR1_HUMAN
Disease (HH2)
---
C/D
R
250
W
15
UniProt
VAR_004111
P
252
R
FGFR1_HUMAN
Disease (PS)
---
C/D
P
252
R
16
UniProt
VAR_042202
P
252
T
FGFR1_HUMAN
Unclassified
---
C/D
P
252
T
17
UniProt
VAR_030981
R
254
Q
FGFR1_HUMAN
Disease (HH2)
---
C/D
R
254
Q
18
UniProt
VAR_030982
G
270
D
FGFR1_HUMAN
Disease (HH2)
---
C/D
G
270
D
19
UniProt
VAR_030983
V
273
M
FGFR1_HUMAN
Disease (HH2)
---
C/D
V
273
M
20
UniProt
VAR_030984
E
274
G
FGFR1_HUMAN
Disease (HH2)
---
C/D
E
274
G
21
UniProt
VAR_017888
C
277
Y
FGFR1_HUMAN
Disease (HH2)
---
C/D
C
277
Y
22
UniProt
VAR_030985
P
283
R
FGFR1_HUMAN
Disease (HH2)
---
C/D
P
283
R
23
UniProt
VAR_030986
I
300
T
FGFR1_HUMAN
Disease (TRIGNO1)
---
C
I
300
T
24
UniProt
VAR_030987
N
330
I
FGFR1_HUMAN
Disease (OGD)
---
C/D
N
330
I
25
UniProt
VAR_030988
S
332
C
FGFR1_HUMAN
Disease (HH2)
---
C/D
S
332
C
26
UniProt
VAR_030989
Y
339
C
FGFR1_HUMAN
Disease (HH2)
---
C/D
Y
339
C
27
UniProt
VAR_069954
L
342
S
FGFR1_HUMAN
Disease (HH2)
---
C/D
L
342
S
28
UniProt
VAR_030990
A
343
V
FGFR1_HUMAN
Disease (HH2)
---
C/D
A
343
V
29
UniProt
VAR_030991
S
346
C
FGFR1_HUMAN
Disease (HH2)
---
C/D
S
346
C
30
UniProt
VAR_069955
G
348
R
FGFR1_HUMAN
Disease (HH2)
---
C/D
G
348
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:80-103,B:80-103)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF2_HUMAN
222-245
2
A:80-103
B:80-103
[
close PROSITE info
]
Exons
(3, 6)
Info
All Exons
Exon 1.1 (A:16-51 | B:16-51)
Exon 1.2 (A:51-85 | B:51-85)
Exon 1.3b (A:86-144 | B:86-144)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3b
4: Boundary 1.3b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000264498
1
ENSE00001081612
chr4:
123747863-123748507
645
FGF2_HUMAN
1-193
193
2
A:16-51
B:16-51
36
36
1.2
ENST00000264498
2
ENSE00000970285
chr4:
123797476-123797579
104
FGF2_HUMAN
193-227
35
2
A:51-85
B:51-85
35
35
1.3b
ENST00000264498
3b
ENSE00001081614
chr4:
123813366-123819391
6026
FGF2_HUMAN
228-288
61
2
A:86-144
B:86-144
59
59
[
close EXON info
]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1cvsa_ (A:)
1b: SCOP_d1cvsb_ (B:)
2a: SCOP_d1cvsc1 (C:149-250)
2b: SCOP_d1cvsc2 (C:251-359)
2c: SCOP_d1cvsd1 (D:149-250)
2d: SCOP_d1cvsd2 (D:251-359)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Basic FGF (FGF2)
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1cvsa_
A:
1b
d1cvsb_
B:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Fibroblast growth factor receptor, FGFR
(15)
Human (Homo sapiens), FGFR1 [TaxId: 9606]
(3)
2a
d1cvsc1
C:149-250
2b
d1cvsc2
C:251-359
2c
d1cvsd1
D:149-250
2d
d1cvsd2
D:251-359
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1cvsC01 (C:149-249)
1b: CATH_1cvsD01 (D:149-249)
1c: CATH_1cvsC02 (C:250-359)
1d: CATH_1cvsD02 (D:250-358)
2a: CATH_1cvsA00 (A:16-144)
2b: CATH_1cvsB00 (B:16-144)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1cvsC01
C:149-249
1b
1cvsD01
D:149-249
1c
1cvsC02
C:250-359
1d
1cvsD02
D:250-358
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
2a
1cvsA00
A:16-144
2b
1cvsB00
B:16-144
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
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)
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Protein & NOT PROSITE
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Chain D
Asymmetric Unit 1
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Asym.Unit (111 KB)
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