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1CVN
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
CONCANAVALIN A COMPLEXED TO TRIMANNOSIDE
Authors
:
J. H. Naismith
Date
:
09 Aug 95 (Deposition) - 14 Oct 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Concanavalin A, Saccharide Binding, Lectin (Agglutinin)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. H. Naismith, R. A. Field
Structural Basis Of Trimannoside Recognition By Concanavalin A.
J. Biol. Chem. V. 271 972 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
MAN
12
Ligand/Ion
ALPHA-D-MANNOSE
3
MN
4
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:12 , ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , GLY A:227 , ARG A:228 , MAN A:241 , HOH A:255 , HOH A:259
BINDING SITE FOR RESIDUE MAN A 240
02
AC2
SOFTWARE
TYR A:12 , ASP A:16 , MAN A:240 , MAN A:242 , HOH A:268
BINDING SITE FOR RESIDUE MAN A 241
03
AC3
SOFTWARE
TYR A:12 , PRO A:13 , ASN A:14 , THR A:15 , ASP A:16 , MAN A:241 , HOH A:314 , THR D:15 , ASP D:16 , MAN D:242
BINDING SITE FOR RESIDUE MAN A 242
04
AC4
SOFTWARE
ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , ALA B:207 , ASP B:208 , GLY B:227 , ARG B:228 , MAN B:241 , HOH B:283 , HOH B:287
BINDING SITE FOR RESIDUE MAN B 240
05
AC5
SOFTWARE
TYR B:12 , ASP B:16 , LEU B:99 , MAN B:240 , MAN B:242 , HOH B:257
BINDING SITE FOR RESIDUE MAN B 241
06
AC6
SOFTWARE
TYR B:12 , PRO B:13 , ASN B:14 , THR B:15 , ASP B:16 , MAN B:241
BINDING SITE FOR RESIDUE MAN B 242
07
AC7
SOFTWARE
ASN C:14 , GLY C:98 , LEU C:99 , TYR C:100 , ALA C:207 , ASP C:208 , GLY C:227 , ARG C:228 , MAN C:241 , HOH C:264 , HOH C:278
BINDING SITE FOR RESIDUE MAN C 240
08
AC8
SOFTWARE
TYR C:12 , ASP C:16 , MAN C:240 , MAN C:242 , HOH C:256 , HOH C:279 , HOH C:289
BINDING SITE FOR RESIDUE MAN C 241
09
AC9
SOFTWARE
PRO C:13 , ASN C:14 , THR C:15 , ASP C:16 , MAN C:241
BINDING SITE FOR RESIDUE MAN C 242
10
BC1
SOFTWARE
TYR D:12 , ASN D:14 , GLY D:98 , LEU D:99 , TYR D:100 , ALA D:207 , ASP D:208 , GLY D:227 , ARG D:228 , MAN D:241 , HOH D:271
BINDING SITE FOR RESIDUE MAN D 240
11
BC2
SOFTWARE
TYR D:12 , ASP D:16 , MAN D:240 , MAN D:242 , HOH D:249
BINDING SITE FOR RESIDUE MAN D 241
12
BC3
SOFTWARE
MAN A:242 , TYR D:12 , PRO D:13 , ASN D:14 , THR D:15 , ASP D:16 , MAN D:241
BINDING SITE FOR RESIDUE MAN D 242
13
BC4
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:245 , HOH A:254
BINDING SITE FOR RESIDUE MN A 238
14
BC5
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:243 , HOH A:251
BINDING SITE FOR RESIDUE CA A 239
15
BC6
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:246 , HOH B:248
BINDING SITE FOR RESIDUE MN B 238
16
BC7
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:250 , HOH B:254
BINDING SITE FOR RESIDUE CA B 239
17
BC8
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:252 , HOH C:253
BINDING SITE FOR RESIDUE MN C 238
18
BC9
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:243 , HOH C:249
BINDING SITE FOR RESIDUE CA C 239
19
CC1
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:244 , HOH D:256
BINDING SITE FOR RESIDUE MN D 238
20
CC2
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19 , HOH D:245 , HOH D:255
BINDING SITE FOR RESIDUE CA D 239
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1cvna_ (A:)
1b: SCOP_d1cvnb_ (B:)
1c: SCOP_d1cvnc_ (C:)
1d: SCOP_d1cvnd_ (D:)
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(
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(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Concanavalin A
(59)
Jack bean (Canavalia ensiformis) [TaxId: 3823]
(52)
1a
d1cvna_
A:
1b
d1cvnb_
B:
1c
d1cvnc_
C:
1d
d1cvnd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1cvnA00 (A:1-237)
1b: CATH_1cvnB00 (B:1-237)
1c: CATH_1cvnC00 (C:1-237)
1d: CATH_1cvnD00 (D:1-237)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Jack bean (Canavalia ensiformis)
(50)
1a
1cvnA00
A:1-237
1b
1cvnB00
B:1-237
1c
1cvnC00
C:1-237
1d
1cvnD00
D:1-237
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
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Backbone
Sidechain
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (163 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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