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1CVL
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACTERIAL LIPASE FROM CHROMOBACTERIUM VISCOSUM ATCC 6918
Authors
:
D. A. Lang, B. Hofmann, L. Haalck, H. -J. Hecht, F. Spener, R. D. Schmid, D. Schomburg
Date
:
09 Jan 97 (Deposition) - 01 Apr 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Triacylglycerol-Hydrolase, X-Ray Crystallography, Pseudomonadaceae, Oxyanion, Cis-Peptide, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
D. Lang, B. Hofmann, L. Haalck, H. J. Hecht, F. Spener, R. D. Schmid, D. Schomburg
Crystal Structure Of A Bacterial Lipase From Chromobacterium Viscosum Atcc 6918 Refined At 1. 6 Angstroms Resolution.
J. Mol. Biol. V. 259 704 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
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No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: ACT (UNKNOWN)
3: CA (UNKNOWN)
4: OXY (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:241 , ASP A:287 , GLN A:291 , LEU A:292 , VAL A:295 , HOH A:406 , HOH A:555
BINDING SITE FOR RESIDUE CA A 320
2
ACT
UNKNOWN
SER A:87 , HIS A:285 , ASP A:263
THE CATALYTIC TRIAD OF THE ACTIVE CENTER CONSISTS OF THE RESIDUES SER 87 - HIS 285 - ASP 263, ALTHOUGH THEY ARE NOT EXPOSED TO THE SOLVENT, BUT A NARROW CHANNEL CONNECTS THEM WITH THE SURFACE.
3
CA
UNKNOWN
ASP A:241 , ASP A:287 , GLN A:291 , VAL A:295 , HOH A:460 , HOH A:555
CA BINDING SITE.
4
OXY
UNKNOWN
LEU A:17 , GLN A:88
PERFORMED OXYANION, STABILIZED BY THE AMIDE NITROGEN ATOMS OF LEU 17 AND GLN 88, ALREADY PRESENT IN CLOSED CONFORMATION OF THE LIPASE.
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
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1: LIPASE_SER (A:81-90)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
LIP_BURGL
120-129
1
A:81-90
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1cvla_ (A:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Bacterial lipase
(39)
Protein domain
:
Lipase
(10)
Chromobacterium viscosum [TaxId: 42739]
(1)
1a
d1cvla_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1cvlA00 (A:1-319)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Chromobacterium viscosum. Organism_taxid: 42739.
(1)
1a
1cvlA00
A:1-319
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Pfam Domains
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Chain A
Asymmetric Unit 1
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