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1CVJ
Biol. Unit 6
Info
Asym.Unit (235 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (33 KB)
Biol.Unit 4 (32 KB)
Biol.Unit 5 (34 KB)
Biol.Unit 6 (28 KB)
Biol.Unit 7 (33 KB)
Biol.Unit 8 (28 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA
Authors
:
R. C. Deo, J. B. Bonanno, N. Sonenberg, S. K. Burley
Date
:
23 Aug 99 (Deposition) - 04 Oct 99 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,M (1x)
Biol. Unit 2: B,N (1x)
Biol. Unit 3: C,O (1x)
Biol. Unit 4: D,P (1x)
Biol. Unit 5: E,Q (1x)
Biol. Unit 6: F,R (1x)
Biol. Unit 7: G,S (1x)
Biol. Unit 8: H,T (1x)
Keywords
:
Rrm, Protein-Rna Complex, Gene Regulation-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. C. Deo, J. B. Bonanno, N. Sonenberg, S. K. Burley
Recognition Of Polyadenylate Rna By The Poly(A)-Binding Protein.
Cell(Cambridge, Mass. ) V. 98 835 1999
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ADENOSINE-5'-MONOPHOSPHATE (Aa)
1b: ADENOSINE-5'-MONOPHOSPHATE (Ab)
1c: ADENOSINE-5'-MONOPHOSPHATE (Ac)
1d: ADENOSINE-5'-MONOPHOSPHATE (Ad)
1e: ADENOSINE-5'-MONOPHOSPHATE (Ae)
1f: ADENOSINE-5'-MONOPHOSPHATE (Af)
1g: ADENOSINE-5'-MONOPHOSPHATE (Ag)
1h: ADENOSINE-5'-MONOPHOSPHATE (Ah)
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Sites
(1, 1)
Info
All Sites
1: AC6 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
A R:6
BINDING SITE FOR RESIDUE A F 996
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (F:11-89,F:99-173)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
PABP1_HUMAN
11-89
99-175
191-268
294-370
2
-
-
-
-
-
F:11-89
-
-
-
-
-
-
-
F:99-173
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1cvja1 (A:11-90)
1b: SCOP_d1cvja2 (A:91-179)
1c: SCOP_d1cvjf1 (F:11-90)
1d: SCOP_d1cvjf2 (F:91-173)
1e: SCOP_d1cvjg1 (G:11-90)
1f: SCOP_d1cvjg2 (G:91-175)
1g: SCOP_d1cvjh1 (H:11-90)
1h: SCOP_d1cvjh2 (H:91-175)
1i: SCOP_d1cvjb1 (B:11-90)
1j: SCOP_d1cvjb2 (B:91-175)
1k: SCOP_d1cvjc1 (C:11-90)
1l: SCOP_d1cvjc2 (C:91-178)
1m: SCOP_d1cvjd1 (D:11-90)
1n: SCOP_d1cvjd2 (D:91-175)
1o: SCOP_d1cvje1 (E:11-90)
1p: SCOP_d1cvje2 (E:91-178)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Poly(A)-binding protein
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1cvja1
A:11-90
1b
d1cvja2
A:91-179
1c
d1cvjf1
F:11-90
1d
d1cvjf2
F:91-173
1e
d1cvjg1
G:11-90
1f
d1cvjg2
G:91-175
1g
d1cvjh1
H:11-90
1h
d1cvjh2
H:91-175
1i
d1cvjb1
B:11-90
1j
d1cvjb2
B:91-175
1k
d1cvjc1
C:11-90
1l
d1cvjc2
C:91-178
1m
d1cvjd1
D:11-90
1n
d1cvjd2
D:91-175
1o
d1cvje1
E:11-90
1p
d1cvje2
E:91-178
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1cvjG02 (G:88-175)
1b: CATH_1cvjC02 (C:88-178)
1c: CATH_1cvjE02 (E:88-178)
1d: CATH_1cvjA02 (A:88-179)
1e: CATH_1cvjD02 (D:88-174)
1f: CATH_1cvjB02 (B:88-173)
1g: CATH_1cvjF02 (F:88-170)
1h: CATH_1cvjA01 (A:11-87)
1i: CATH_1cvjB01 (B:11-87)
1j: CATH_1cvjC01 (C:11-87)
1k: CATH_1cvjD01 (D:11-87)
1l: CATH_1cvjE01 (E:11-87)
1m: CATH_1cvjF01 (F:11-87)
1n: CATH_1cvjG01 (G:11-87)
1o: CATH_1cvjH01 (H:11-87)
1p: CATH_1cvjH02 (H:88-152)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
[unclassified]
(45)
1a
1cvjG02
G:88-175
1b
1cvjC02
C:88-178
1c
1cvjE02
E:88-178
1d
1cvjA02
A:88-179
1e
1cvjD02
D:88-174
1f
1cvjB02
B:88-173
1g
1cvjF02
F:88-170
1h
1cvjA01
A:11-87
1i
1cvjB01
B:11-87
1j
1cvjC01
C:11-87
1k
1cvjD01
D:11-87
1l
1cvjE01
E:11-87
1m
1cvjF01
F:11-87
1n
1cvjG01
G:11-87
1o
1cvjH01
H:11-87
1p
1cvjH02
H:88-152
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
Biol.Unit 3 (33 KB)
Header - Biol.Unit 3
Biol.Unit 4 (32 KB)
Header - Biol.Unit 4
Biol.Unit 5 (34 KB)
Header - Biol.Unit 5
Biol.Unit 6 (28 KB)
Header - Biol.Unit 6
Biol.Unit 7 (33 KB)
Header - Biol.Unit 7
Biol.Unit 8 (28 KB)
Header - Biol.Unit 8
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