PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1CSY
Asym. Unit
Info
Asym.Unit (639 KB)
Biol.Unit 1 (33 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SYK TYROSINE KINASE C-TERMINAL SH2 DOMAIN COMPLEXED WITH A PHOSPHOPEPTIDEFROM THE GAMMA CHAIN OF THE HIGH AFFINITY IMMUNOGLOBIN G RECEPTOR, NMR
Authors
:
S. S. Narula, R. W. Yuan, S. E. Adams, O. M. Green, J. Green, T. B. Phillips L. D. Zydowsky, M. C. Botfield, M. H. Hatada, E. R. Laird, M. J. Zoller, J D. C. Dalgarno
Date
:
03 Oct 95 (Deposition) - 08 Nov 96 (Release) - 22 Feb 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Tyrosine Kinase Sh2 Domain, Complex (Phosphotransferase- Peptide), Complex (Phosphotransferase-Peptide) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. Narula, R. W. Yuan, S. E. Adams, O. M. Green, J. Green, T. B. Philips L. D. Zydowsky, M. C. Botfield, M. Hatada, E. R. Laird, M. J. Zoller, J. L. Karas, D. C. Dalgarno
Solution Structure Of The C-Terminal Sh2 Domain Of The Huma Tyrosine Kinase Syk Complexed With A Phosphotyrosine Pentapeptide.
Structure V. 3 1061 1995
[
close entry info
]
Hetero Components
(3, 3)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: AMINO GROUP (NH2a)
3a: O-PHOSPHOTYROSINE (PTRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
3
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLU A:77 , THR B:4 , LEU B:5
BINDING SITE FOR RESIDUE NH2 B 6
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH2 (-|A:15-106)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
KSYK_HUMAN
15-107
168-259
1
-
A:15-106
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.4b (A:1-8 (gaps))
Exon 1.5 (A:9-40)
Exon 1.6 (A:40-86)
Exon 1.7 (A:87-112)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000375754
1
ENSE00001468303
chr9:
93564069-93564175
107
KSYK_HUMAN
-
0
0
-
-
1.4b
ENST00000375754
4b
ENSE00001468302
chr9:
93606140-93606597
458
KSYK_HUMAN
1-139
139
1
A:1-8 (gaps)
40
1.5
ENST00000375754
5
ENSE00001176524
chr9:
93607716-93607876
161
KSYK_HUMAN
140-193
54
1
A:9-40
32
1.6
ENST00000375754
6
ENSE00001176518
chr9:
93624488-93624626
139
KSYK_HUMAN
193-239
47
1
A:40-86
47
1.7
ENST00000375754
7
ENSE00001176425
chr9:
93626871-93626949
79
KSYK_HUMAN
240-266
27
1
A:87-112
26
1.8
ENST00000375754
8
ENSE00001176505
chr9:
93627330-93627379
50
KSYK_HUMAN
266-282
17
0
-
-
1.9
ENST00000375754
9
ENSE00001176494
chr9:
93629413-93629481
69
KSYK_HUMAN
283-305
23
0
-
-
1.10
ENST00000375754
10
ENSE00001176486
chr9:
93636486-93636573
88
KSYK_HUMAN
306-335
30
0
-
-
1.11
ENST00000375754
11
ENSE00001176477
chr9:
93636954-93637131
178
KSYK_HUMAN
335-394
60
0
-
-
1.12
ENST00000375754
12
ENSE00001176467
chr9:
93639853-93640062
210
KSYK_HUMAN
394-464
71
0
-
-
1.13
ENST00000375754
13
ENSE00001176458
chr9:
93641046-93641235
190
KSYK_HUMAN
464-527
64
0
-
-
1.14
ENST00000375754
14
ENSE00001176447
chr9:
93650031-93650171
141
KSYK_HUMAN
528-574
47
0
-
-
1.15
ENST00000375754
15
ENSE00001176435
chr9:
93650797-93650909
113
KSYK_HUMAN
575-612
38
0
-
-
1.16
ENST00000375754
16
ENSE00001468273
chr9:
93657810-93660831
3022
KSYK_HUMAN
612-635
24
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1csya_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Syk tyrosine kinase
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1csya_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1csyA00 (A:1-112)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1csyA00
A:1-112
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (639 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1CSY
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
