PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1CS0
Biol. Unit 5
Info
Asym.Unit (1005 KB)
Biol.Unit 1 (987 KB)
Biol.Unit 2 (262 KB)
Biol.Unit 3 (257 KB)
Biol.Unit 4 (262 KB)
Biol.Unit 5 (263 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF CARBAMOYL PHOSPHATE SYNTHETASE COMPLEXED AT CYS269 IN THE SMALL SUBUNIT WITH THE TETRAHEDRAL MIMIC L-GLUTAMATE GAMMA-SEMIALDEHYDE
Authors
:
J. B. Thoden, X. Huang, F. M. Raushel, H. M. Holden
Date
:
16 Aug 99 (Deposition) - 10 Dec 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: G,H (1x)
Biol. Unit 4: A,B (1x)
Biol. Unit 5: E,F (1x)
Keywords
:
Tetrahedral Analog, Amidotransferase, Substrate Channeling, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Thoden, X. Huang, F. M. Raushel, H. M. Holden
The Small Subunit Of Carbamoyl Phosphate Synthetase: Snapshots Along The Reaction Pathway.
Biochemistry V. 38 16158 1999
[
close entry info
]
Hetero Components
(5, 7)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
1h: ADENOSINE-5'-DIPHOSPHATE (ADPh)
2a: CHLORIDE ION (CLa)
2aa: CHLORIDE ION (CLaa)
2ab: CHLORIDE ION (CLab)
2ac: CHLORIDE ION (CLac)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
2m: CHLORIDE ION (CLm)
2n: CHLORIDE ION (CLn)
2o: CHLORIDE ION (CLo)
2p: CHLORIDE ION (CLp)
2q: CHLORIDE ION (CLq)
2r: CHLORIDE ION (CLr)
2s: CHLORIDE ION (CLs)
2t: CHLORIDE ION (CLt)
2u: CHLORIDE ION (CLu)
2v: CHLORIDE ION (CLv)
2w: CHLORIDE ION (CLw)
2x: CHLORIDE ION (CLx)
2y: CHLORIDE ION (CLy)
2z: CHLORIDE ION (CLz)
3a: 2-AMINO-4-(AMINO-3-OXO-PROPYLSULFA... (CYGa)
3b: 2-AMINO-4-(AMINO-3-OXO-PROPYLSULFA... (CYGb)
3c: 2-AMINO-4-(AMINO-3-OXO-PROPYLSULFA... (CYGc)
3d: 2-AMINO-4-(AMINO-3-OXO-PROPYLSULFA... (CYGd)
4a: POTASSIUM ION (Ka)
4aa: POTASSIUM ION (Kaa)
4ab: POTASSIUM ION (Kab)
4ac: POTASSIUM ION (Kac)
4ad: POTASSIUM ION (Kad)
4ae: POTASSIUM ION (Kae)
4af: POTASSIUM ION (Kaf)
4ag: POTASSIUM ION (Kag)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
4q: POTASSIUM ION (Kq)
4r: POTASSIUM ION (Kr)
4s: POTASSIUM ION (Ks)
4t: POTASSIUM ION (Kt)
4u: POTASSIUM ION (Ku)
4v: POTASSIUM ION (Kv)
4w: POTASSIUM ION (Kw)
4x: POTASSIUM ION (Kx)
4y: POTASSIUM ION (Ky)
4z: POTASSIUM ION (Kz)
5a: MANGANESE (II) ION (MNa)
5b: MANGANESE (II) ION (MNb)
5c: MANGANESE (II) ION (MNc)
5d: MANGANESE (II) ION (MNd)
5e: MANGANESE (II) ION (MNe)
5f: MANGANESE (II) ION (MNf)
5g: MANGANESE (II) ION (MNg)
5h: MANGANESE (II) ION (MNh)
5i: MANGANESE (II) ION (MNi)
5j: MANGANESE (II) ION (MNj)
5k: MANGANESE (II) ION (MNk)
5l: MANGANESE (II) ION (MNl)
6a: TETRAETHYLAMMONIUM ION (NETa)
6b: TETRAETHYLAMMONIUM ION (NETb)
6c: TETRAETHYLAMMONIUM ION (NETc)
6d: TETRAETHYLAMMONIUM ION (NETd)
7a: L-ORNITHINE (ORNa)
7b: L-ORNITHINE (ORNb)
7c: L-ORNITHINE (ORNc)
7d: L-ORNITHINE (ORNd)
8a: PHOSPHATE ION (PO4a)
8b: PHOSPHATE ION (PO4b)
8c: PHOSPHATE ION (PO4c)
8d: PHOSPHATE ION (PO4d)
8e: PHOSPHATE ION (PO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
CYG
1
Mod. Amino Acid
2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRICACID
4
K
-1
Ligand/Ion
POTASSIUM ION
5
MN
-1
Ligand/Ion
MANGANESE (II) ION
6
NET
1
Ligand/Ion
TETRAETHYLAMMONIUM ION
7
ORN
1
Ligand/Ion
L-ORNITHINE
8
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: CC2 (SOFTWARE)
02: CC5 (SOFTWARE)
03: CC8 (SOFTWARE)
04: DC2 (SOFTWARE)
05: DC5 (SOFTWARE)
06: DC7 (SOFTWARE)
07: DC9 (SOFTWARE)
08: EC2 (SOFTWARE)
09: EC4 (SOFTWARE)
10: EC6 (SOFTWARE)
11: EC8 (SOFTWARE)
12: FC1 (SOFTWARE)
13: GC7 (SOFTWARE)
14: GC9 (SOFTWARE)
15: HC2 (SOFTWARE)
16: HC4 (SOFTWARE)
17: HC6 (SOFTWARE)
18: HC8 (SOFTWARE)
19: IC1 (SOFTWARE)
20: IC5 (SOFTWARE)
21: IC6 (SOFTWARE)
22: JC7 (SOFTWARE)
23: JC8 (SOFTWARE)
24: JC9 (SOFTWARE)
25: KC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC2
SOFTWARE
GLN E:93 , THR E:173 , MET E:174 , HOH E:5116
BINDING SITE FOR RESIDUE CL E 5058
02
CC5
SOFTWARE
ASN E:289 , ASN E:292 , ARG E:294
BINDING SITE FOR RESIDUE CL E 5059
03
CC8
SOFTWARE
ASN E:371 , PHE E:900 , PRO E:901 , GLY E:902
BINDING SITE FOR RESIDUE CL E 5060
04
DC2
SOFTWARE
LYS E:941
BINDING SITE FOR RESIDUE CL E 5061
05
DC5
SOFTWARE
ARG E:950 , GLU E:951 , GLY E:952
BINDING SITE FOR RESIDUE CL E 5062
06
DC7
SOFTWARE
LYS F:285
BINDING SITE FOR RESIDUE CL F 5063
07
DC9
SOFTWARE
PHE F:15 , ASP F:114 , HOH F:2657
BINDING SITE FOR RESIDUE CL F 5064
08
EC2
SOFTWARE
ASP E:84 , GLY E:112 , THR E:114 , HOH E:5704
BINDING SITE FOR RESIDUE K E 5065
09
EC4
SOFTWARE
HOH E:5511 , HIS F:16 , ASP F:112 , HOH F:2618
BINDING SITE FOR RESIDUE K F 5066
10
EC6
SOFTWARE
GLU E:217 , THR E:244 , ASN E:283 , GLN E:285 , PO4 E:5051 , HOH E:5143
BINDING SITE FOR RESIDUE K E 5067
11
EC8
SOFTWARE
THR E:279
BINDING SITE FOR RESIDUE K E 5068
12
FC1
SOFTWARE
THR E:143 , ALA E:144 , HOH E:5243
BINDING SITE FOR RESIDUE K E 5069
13
GC7
SOFTWARE
GLU E:299 , ASN E:301 , ADP E:5046 , MN E:5048 , PO4 E:5051 , HOH E:5140
BINDING SITE FOR RESIDUE MN E 5047
14
GC9
SOFTWARE
GLN E:285 , GLU E:299 , ADP E:5046 , MN E:5047 , PO4 E:5051 , HOH E:5139
BINDING SITE FOR RESIDUE MN E 5048
15
HC2
SOFTWARE
GLU E:215 , ASN E:236 , ASP E:238 , ALA E:239 , ILE E:242 , SER E:247
BINDING SITE FOR RESIDUE K E 5049
16
HC4
SOFTWARE
ALA E:126 , GLU E:127 , GLU E:299 , MET E:300 , ASN E:301 , HOH E:5233 , HOH E:5697
BINDING SITE FOR RESIDUE K E 5050
17
HC6
SOFTWARE
GLN E:829 , GLU E:841 , ADP E:5052 , HOH E:5147
BINDING SITE FOR RESIDUE MN E 5053
18
HC8
SOFTWARE
GLU E:841 , ASN E:843 , ADP E:5052
BINDING SITE FOR RESIDUE K E 5054
19
IC1
SOFTWARE
GLU E:761 , HIS E:781 , GLU E:783 , GLN E:784 , VAL E:787 , SER E:792
BINDING SITE FOR RESIDUE K E 5055
20
IC5
SOFTWARE
MET E:174 , GLY E:175 , HIS E:243 , GLN E:285 , GLU E:299 , ASN E:301 , ARG E:303 , ARG E:306 , ADP E:5046 , MN E:5047 , MN E:5048 , K E:5067 , HOH E:5141 , HOH E:5143
BINDING SITE FOR RESIDUE PO4 E 5051
21
IC6
SOFTWARE
PRO E:797 , PRO E:885 , PRO E:886 , TYR E:888
BINDING SITE FOR RESIDUE PO4 E 5070
22
JC7
SOFTWARE
ARG E:129 , ILE E:167 , ARG E:169 , THR E:173 , MET E:174 , GLY E:175 , GLY E:176 , GLU E:208 , LEU E:210 , ILE E:211 , GLU E:215 , MET E:240 , GLY E:241 , ILE E:242 , HIS E:243 , THR E:244 , GLN E:285 , ILE E:298 , GLU E:299 , THR E:376 , MN E:5047 , MN E:5048 , PO4 E:5051 , HOH E:5133 , HOH E:5139 , HOH E:5140 , HOH E:5698
BINDING SITE FOR RESIDUE ADP E 5046
23
JC8
SOFTWARE
ARG E:715 , MET E:725 , HIS E:754 , PHE E:755 , LEU E:756 , GLU E:761 , ALA E:785 , GLY E:786 , VAL E:787 , HIS E:788 , SER E:789 , GLN E:829 , GLU E:841 , MN E:5053 , K E:5054 , HOH E:5146 , HOH E:5147 , HOH E:5589
BINDING SITE FOR RESIDUE ADP E 5052
24
JC9
SOFTWARE
GLU E:783 , ASP E:791 , ALA E:793 , GLU E:892 , LEU E:907 , TYR E:1040 , ASP E:1041 , THR E:1042 , HOH E:5077 , HOH E:5079 , HOH E:5082
BINDING SITE FOR RESIDUE ORN E 5056
25
KC1
SOFTWARE
GLN E:22 , THR E:94
BINDING SITE FOR RESIDUE NET E 5057
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CPSASE_1 (E:164-178,E:710-724)
2: CPSASE_2 (E:297-304,E:839-846)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CPSASE_1
PS00866
Carbamoyl-phosphate synthase subdomain signature 1.
CARB_ECOLI
164-178
710-724
2
-
-
E:164-178
-
-
-
E:710-724
-
2
CPSASE_2
PS00867
Carbamoyl-phosphate synthase subdomain signature 2.
CARB_ECOLI
297-304
839-846
2
-
-
E:297-304
-
-
-
E:839-846
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(6, 32)
Info
All SCOP Domains
1a: SCOP_d1cs0a1 (A:403-555)
1b: SCOP_d1cs0e1 (E:403-555)
1c: SCOP_d1cs0g1 (G:403-555)
1d: SCOP_d1cs0c1 (C:403-555)
2a: SCOP_d1cs0a5 (A:128-402)
2b: SCOP_d1cs0a6 (A:677-935)
2c: SCOP_d1cs0c5 (C:128-402)
2d: SCOP_d1cs0c6 (C:677-935)
2e: SCOP_d1cs0e5 (E:128-402)
2f: SCOP_d1cs0e6 (E:677-935)
2g: SCOP_d1cs0g5 (G:128-402)
2h: SCOP_d1cs0g6 (G:677-935)
3a: SCOP_d1cs0b2 (B:153-380)
3b: SCOP_d1cs0f2 (F:153-380)
3c: SCOP_d1cs0h2 (H:153-380)
3d: SCOP_d1cs0d2 (D:153-380)
4a: SCOP_d1cs0a2 (A:936-1073)
4b: SCOP_d1cs0e2 (E:936-1073)
4c: SCOP_d1cs0g2 (G:936-1073)
4d: SCOP_d1cs0c2 (C:936-1073)
5a: SCOP_d1cs0a3 (A:1-127)
5b: SCOP_d1cs0a4 (A:556-676)
5c: SCOP_d1cs0c3 (C:1-127)
5d: SCOP_d1cs0c4 (C:556-676)
5e: SCOP_d1cs0e3 (E:1-127)
5f: SCOP_d1cs0e4 (E:556-676)
5g: SCOP_d1cs0g3 (G:1-127)
5h: SCOP_d1cs0g4 (G:556-676)
6a: SCOP_d1cs0b1 (B:2-152)
6b: SCOP_d1cs0f1 (F:2-152)
6c: SCOP_d1cs0h1 (H:2-152)
6d: SCOP_d1cs0d1 (D:2-152)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Superfamily
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Family
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, large subunit connection domain
(10)
Escherichia coli [TaxId: 562]
(10)
1a
d1cs0a1
A:403-555
1b
d1cs0e1
E:403-555
1c
d1cs0g1
G:403-555
1d
d1cs0c1
C:403-555
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
(10)
Escherichia coli [TaxId: 562]
(10)
2a
d1cs0a5
A:128-402
2b
d1cs0a6
A:677-935
2c
d1cs0c5
C:128-402
2d
d1cs0c6
C:677-935
2e
d1cs0e5
E:128-402
2f
d1cs0e6
E:677-935
2g
d1cs0g5
G:128-402
2h
d1cs0g6
G:677-935
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
Carbamoyl phosphate synthetase, small subunit C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
3a
d1cs0b2
B:153-380
3b
d1cs0f2
F:153-380
3c
d1cs0h2
H:153-380
3d
d1cs0d2
D:153-380
Fold
:
Methylglyoxal synthase-like
(31)
Superfamily
:
Methylglyoxal synthase-like
(31)
Family
:
Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
4a
d1cs0a2
A:936-1073
4b
d1cs0e2
E:936-1073
4c
d1cs0g2
G:936-1073
4d
d1cs0c2
C:936-1073
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
BC N-terminal domain-like
(50)
Protein domain
:
Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
(10)
Escherichia coli [TaxId: 562]
(10)
5a
d1cs0a3
A:1-127
5b
d1cs0a4
A:556-676
5c
d1cs0c3
C:1-127
5d
d1cs0c4
C:556-676
5e
d1cs0e3
E:1-127
5f
d1cs0e4
E:556-676
5g
d1cs0g3
G:1-127
5h
d1cs0g4
G:556-676
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Family
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Protein domain
:
Carbamoyl phosphate synthetase, small subunit N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(10)
6a
d1cs0b1
B:2-152
6b
d1cs0f1
F:2-152
6c
d1cs0h1
H:2-152
6d
d1cs0d1
D:2-152
[
close SCOP info
]
CATH Domains
(7, 40)
Info
all CATH domains
1a: CATH_1cs0A06 (A:664-686,A:757-936)
1b: CATH_1cs0C06 (C:664-686,C:757-936)
1c: CATH_1cs0E06 (E:664-686,E:757-936)
1d: CATH_1cs0G06 (G:664-686,G:757-936)
1e: CATH_1cs0A02 (A:117-140,A:211-403)
1f: CATH_1cs0C02 (C:117-140,C:211-403)
1g: CATH_1cs0E02 (E:117-140,E:211-403)
1h: CATH_1cs0G02 (G:117-140,G:211-403)
2a: CATH_1cs0A03 (A:141-210)
2b: CATH_1cs0C03 (C:141-210)
2c: CATH_1cs0E03 (E:141-210)
2d: CATH_1cs0G03 (G:141-210)
2e: CATH_1cs0A07 (A:687-756)
2f: CATH_1cs0C07 (C:687-756)
2g: CATH_1cs0E07 (E:687-756)
2h: CATH_1cs0G07 (G:687-756)
3a: CATH_1cs0A08 (A:937-1042)
3b: CATH_1cs0C08 (C:937-1042)
3c: CATH_1cs0E08 (E:937-1042)
3d: CATH_1cs0G08 (G:937-1042)
4a: CATH_1cs0A05 (A:554-663)
4b: CATH_1cs0C05 (C:554-663)
4c: CATH_1cs0E05 (E:554-663)
4d: CATH_1cs0G05 (G:554-663)
4e: CATH_1cs0A01 (A:1-116)
4f: CATH_1cs0C01 (C:1-116)
4g: CATH_1cs0E01 (E:1-116)
4h: CATH_1cs0G01 (G:1-116)
5a: CATH_1cs0B02 (B:152-379)
5b: CATH_1cs0D02 (D:152-379)
5c: CATH_1cs0F02 (F:152-379)
5d: CATH_1cs0H02 (H:152-379)
6a: CATH_1cs0B01 (B:2-151)
6b: CATH_1cs0F01 (F:2-151)
6c: CATH_1cs0H01 (H:2-151)
6d: CATH_1cs0D01 (D:2-151)
7a: CATH_1cs0A04 (A:404-553)
7b: CATH_1cs0E04 (E:404-553)
7c: CATH_1cs0G04 (G:404-553)
7d: CATH_1cs0C04 (C:404-553)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Escherichia coli. Organism_taxid: 562.
(16)
1a
1cs0A06
A:664-686,A:757-936
1b
1cs0C06
C:664-686,C:757-936
1c
1cs0E06
E:664-686,E:757-936
1d
1cs0G06
G:664-686,G:757-936
1e
1cs0A02
A:117-140,A:211-403
1f
1cs0C02
C:117-140,C:211-403
1g
1cs0E02
E:117-140,E:211-403
1h
1cs0G02
G:117-140,G:211-403
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Escherichia coli. Organism_taxid: 562.
(21)
2a
1cs0A03
A:141-210
2b
1cs0C03
C:141-210
2c
1cs0E03
E:141-210
2d
1cs0G03
G:141-210
2e
1cs0A07
A:687-756
2f
1cs0C07
C:687-756
2g
1cs0E07
E:687-756
2h
1cs0G07
G:687-756
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1380, no name defined]
(29)
Escherichia coli. Organism_taxid: 562.
(7)
3a
1cs0A08
A:937-1042
3b
1cs0C08
C:937-1042
3c
1cs0E08
E:937-1042
3d
1cs0G08
G:937-1042
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Escherichia coli. Organism_taxid: 562.
(17)
4a
1cs0A05
A:554-663
4b
1cs0C05
C:554-663
4c
1cs0E05
E:554-663
4d
1cs0G05
G:554-663
4e
1cs0A01
A:1-116
4f
1cs0C01
C:1-116
4g
1cs0E01
E:1-116
4h
1cs0G01
G:1-116
Homologous Superfamily
:
[code=3.40.50.880, no name defined]
(97)
Escherichia coli. Organism_taxid: 562.
(8)
5a
1cs0B02
B:152-379
5b
1cs0D02
D:152-379
5c
1cs0F02
F:152-379
5d
1cs0H02
H:152-379
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Glucose Oxidase; domain 1
(52)
Homologous Superfamily
:
[code=3.50.30.20, no name defined]
(10)
Escherichia coli. Organism_taxid: 562.
(6)
6a
1cs0B01
B:2-151
6b
1cs0F01
F:2-151
6c
1cs0H01
H:2-151
6d
1cs0D01
D:2-151
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Carbamoyl Phosphate Synthetase; Chain A, domain 4
(10)
Homologous Superfamily
:
Carbamoyl Phosphate Synthetase; Chain A, domain 4
(10)
Escherichia coli. Organism_taxid: 562.
(6)
7a
1cs0A04
A:404-553
7b
1cs0E04
E:404-553
7c
1cs0G04
G:404-553
7d
1cs0C04
C:404-553
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1005 KB)
Header - Asym.Unit
Biol.Unit 1 (987 KB)
Header - Biol.Unit 1
Biol.Unit 2 (262 KB)
Header - Biol.Unit 2
Biol.Unit 3 (257 KB)
Header - Biol.Unit 3
Biol.Unit 4 (262 KB)
Header - Biol.Unit 4
Biol.Unit 5 (263 KB)
Header - Biol.Unit 5
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1CS0
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help