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Getting 'Hetero Component' information from database.
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1CQE
Asym. Unit
Info
Asym.Unit (200 KB)
Biol.Unit 1 (193 KB)
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(1)
Title
:
PROSTAGLANDIN H2 SYNTHASE-1 COMPLEX WITH FLURBIPROFEN
Authors
:
D. Picot, P. J. Loll, A. M. Mulichak, R. M. Garavito
Date
:
15 Jun 99 (Deposition) - 30 Jun 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Dioxygenase, Peroxidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Picot, P. J. Loll, R. M. Garavito
The X-Ray Crystal Structure Of The Membrane Protein Prostaglandin H2 Synthase-1.
Nature V. 367 243 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 21)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
2a: FLURBIPROFEN (FLPa)
2b: FLURBIPROFEN (FLPb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
5
Ligand/Ion
B-OCTYLGLUCOSIDE
2
FLP
2
Ligand/Ion
FLURBIPROFEN
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: COA (AUTHOR)
23: COB (AUTHOR)
24: POA (AUTHOR)
25: POB (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:55 , ASN A:68 , NAG A:662
BINDING SITE FOR RESIDUE NAG A 661
02
AC2
SOFTWARE
TYR A:38 , NAG A:661
BINDING SITE FOR RESIDUE NAG A 662
03
AC3
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , NAG A:672 , HOH A:881
BINDING SITE FOR RESIDUE NAG A 671
04
AC4
SOFTWARE
MET A:216 , NAG A:671 , LEU B:238 , GLU B:239
BINDING SITE FOR RESIDUE NAG A 672
05
AC5
SOFTWARE
TYR A:402 , GLN A:406 , ASN A:410 , MET A:413 , ASP A:416 , TYR A:417 , NAG A:682
BINDING SITE FOR RESIDUE NAG A 681
06
AC6
SOFTWARE
GLN A:400 , GLN A:406 , NAG A:681
BINDING SITE FOR RESIDUE NAG A 682
07
AC7
SOFTWARE
TYR B:55 , ASN B:68 , NAG B:662
BINDING SITE FOR RESIDUE NAG B 661
08
AC8
SOFTWARE
TYR B:38 , NAG B:661
BINDING SITE FOR RESIDUE NAG B 662
09
AC9
SOFTWARE
GLU B:140 , ASN B:144 , TYR B:147 , NAG B:672 , HOH B:981
BINDING SITE FOR RESIDUE NAG B 671
10
BC1
SOFTWARE
LEU A:238 , GLU A:239 , MET B:216 , NAG B:671
BINDING SITE FOR RESIDUE NAG B 672
11
BC2
SOFTWARE
GLN A:282 , TYR B:402 , GLN B:406 , ASN B:410 , MET B:413 , ASP B:416 , TYR B:417 , NAG B:682
BINDING SITE FOR RESIDUE NAG B 681
12
BC3
SOFTWARE
GLN B:400 , TYR B:402 , GLN B:406 , NAG B:681
BINDING SITE FOR RESIDUE NAG B 682
13
BC4
SOFTWARE
THR A:70 , ILE A:74 , TRP A:77 , TRP B:98 , ASP B:101 , PHE B:102
BINDING SITE FOR RESIDUE BOG A 1701
14
BC5
SOFTWARE
LEU A:115 , VAL A:116 , VAL A:119 , HOH A:885 , HOH A:1124
BINDING SITE FOR RESIDUE BOG A 1702
15
BC6
SOFTWARE
PHE B:102 , THR B:106 , PHE B:107 , ILE B:108
BINDING SITE FOR RESIDUE BOG A 1703
16
BC7
SOFTWARE
LEU B:115 , VAL B:116 , VAL B:119 , ARG B:120 , HOH B:985
BINDING SITE FOR RESIDUE BOG B 2802
17
BC8
SOFTWARE
GLY B:96 , LEU B:99
BINDING SITE FOR RESIDUE BOG B 2803
18
BC9
SOFTWARE
ALA A:199 , ALA A:202 , GLN A:203 , HIS A:207 , PHE A:210 , LYS A:211 , THR A:212 , LEU A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , MET A:391 , ILE A:444 , VAL A:447 , ASP A:450
BINDING SITE FOR RESIDUE HEM A 601
19
CC1
SOFTWARE
ALA B:199 , ALA B:202 , GLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , LEU B:295 , ASN B:382 , TYR B:385 , HIS B:386 , HIS B:388 , MET B:391 , ILE B:444 , VAL B:447 , ASP B:450
BINDING SITE FOR RESIDUE HEM B 601
20
CC2
SOFTWARE
VAL A:116 , ARG A:120 , VAL A:349 , LEU A:352 , TYR A:355 , LEU A:359 , TYR A:385 , TRP A:387 , ILE A:523 , GLY A:526 , ALA A:527 , SER A:530
BINDING SITE FOR RESIDUE FLP A 1650
21
CC3
SOFTWARE
ARG B:120 , VAL B:349 , LEU B:352 , TYR B:355 , LEU B:359 , TYR B:385 , TRP B:387 , ILE B:523 , GLY B:526 , ALA B:527 , SER B:530
BINDING SITE FOR RESIDUE FLP B 2650
22
COA
AUTHOR
ARG A:120 , TYR A:355 , TYR A:385 , TRP A:387 , ILE A:523 , SER A:530
HYDROPHOBIC CHANNEL RESPONSIBLE FOR CYCLOOGENASE ACTIVITY
23
COB
AUTHOR
ARG B:120 , TYR B:355 , TYR B:385 , TRP B:387 , ILE B:523 , SER B:530
HYDROPHOBIC CHANNEL RESPONSIBLE FOR CYCLOOGENASE ACTIVITY
24
POA
AUTHOR
HEM A:601 , HIS A:207 , HIS A:388
HEME POCKET RESPONSIBLE FOR PEROXIDASE ACTIVITY
25
POB
AUTHOR
HEM B:601 , HIS B:207 , HIS B:388
HEME POCKET RESPONSIBLE FOR PEROXIDASE ACTIVITY
[
close Site info
]
SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PGH1_SHEEP_001 (R97H, chain A/B, )
2: VAR_PGH1_SHEEP_002 (G164G, chain A/B, )
3: VAR_PGH1_SHEEP_003 (R456Q, chain A/B, )
4: VAR_PGH1_SHEEP_004 (E520K, chain A/B, )
5: VAR_PGH1_SHEEP_005 (E520Q, chain A/B, )
6: VAR_PGH1_SHEEP_006 (M525I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PGH1_SHEEP_001
*
R
97
H
PGH1_SHEEP
---
---
A/B
R
97
H
2
UniProt
VAR_PGH1_SHEEP_002
*
D
164
G
PGH1_SHEEP
---
---
A/B
G
164
G
3
UniProt
VAR_PGH1_SHEEP_003
*
R
456
Q
PGH1_SHEEP
---
---
A/B
R
456
Q
4
UniProt
VAR_PGH1_SHEEP_004
*
E
520
K
PGH1_SHEEP
---
---
A/B
E
520
K
5
UniProt
VAR_PGH1_SHEEP_005
*
E
520
Q
PGH1_SHEEP
---
---
A/B
E
520
Q
6
UniProt
VAR_PGH1_SHEEP_006
*
M
525
I
PGH1_SHEEP
---
---
A/B
M
525
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (A:32-70,B:32-70)
2: PEROXIDASE_3 (A:110-583,B:110-583)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PGH1_SHEEP
32-70
2
A:32-70
B:32-70
2
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH1_SHEEP
110-600
2
A:110-583
B:110-583
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1cqea1 (A:74-583)
1b: SCOP_d1cqeb1 (B:74-583)
2a: SCOP_d1cqea2 (A:32-73)
2b: SCOP_d1cqeb2 (B:31-73)
View:
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Classes
(
)
(
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
Prostaglandin H2 synthase
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
1a
d1cqea1
A:74-583
1b
d1cqeb1
B:74-583
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Prostaglandin H2 synthase-1, EGF-like module
(34)
Sheep (Ovis aries) [TaxId: 9940]
(23)
2a
d1cqea2
A:32-73
2b
d1cqeb2
B:31-73
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1cqeA02 (A:74-583)
1b: CATH_1cqeB02 (B:74-583)
2a: CATH_1cqeA01 (A:33-73)
2b: CATH_1cqeB01 (B:33-73)
View:
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Classes
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
Sheep (Ovis aries)
(18)
1a
1cqeA02
A:74-583
1b
1cqeB02
B:74-583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Sheep (Ovis aries)
(18)
2a
1cqeA01
A:33-73
2b
1cqeB01
B:33-73
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
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Asymmetric Unit 1
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