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Getting 'Exon' information from database.
1CN4
Asym. Unit
Info
Asym.Unit (100 KB)
Biol.Unit 1 (95 KB)
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(1)
Title
:
ERYTHROPOIETIN COMPLEXED WITH EXTRACELLULAR DOMAINS OF ERYTHROPOIETIN RECEPTOR
Authors
:
R. M. Stroud, S. W. Reid
Date
:
25 May 99 (Deposition) - 11 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Haematopoietic Cytokine, Cytokine Receptor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. S. Syed, S. W. Reid, C. Li, J. C. Cheetham, K. H. Aoki, B. Liu, H. Zhan, T. D. Osslund, A. J. Chirino, J. Zhang, J. Finer-Moore, S. Elliott, K. Sitney, B. A. Katz, D. J. Matthews, J. J. Wendoloski, J. Egrie, R. M. Stroud
Efficiency Of Signalling Through Cytokine Receptors Depends Critically On Receptor Orientation.
Nature V. 395 511 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_009871 (P122Q, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_009871
P
149
Q
EPO_HUMAN
Unclassified
---
C
P
122
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: EPO_TPO (C:2-29)
2: FN3 (A:123-223,B:123-223)
3: HEMATOPO_REC_L_F1 (A:138-218,B:138-218)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPO_TPO
PS00817
Erythropoietin / thrombopoeitin signature.
EPO_HUMAN
29-56
1
C:2-29
2
FN3
PS50853
Fibronectin type-III domain profile.
EPOR_HUMAN
147-247
2
A:123-223
B:123-223
3
HEMATOPO_REC_L_F1
PS01352
Long hematopoietin receptor, single chain family signature.
EPOR_HUMAN
162-242
2
A:138-218
B:138-218
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Exons
(10, 16)
Info
All Exons
Exon 1.1 (A:7-15 | B:8-15)
Exon 1.2 (A:15-60 | B:15-60)
Exon 1.3 (A:60-119 | B:60-119)
Exon 1.4 (A:119-171 | B:119-171)
Exon 1.5 (A:172-223 | B:172-223)
Exon 1.6 (A:223-223 | B:223-225)
Exon 2.2 (C:2-26)
Exon 2.3 (C:27-55)
Exon 2.4 (C:56-115)
Exon 2.5 (C:116-162 (gaps))
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 2.1/2.2
09: Boundary 2.2/2.3
10: Boundary 2.3/2.4
11: Boundary 2.4/2.5
12: Boundary 2.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000222139
1
ENSE00001338639
chr19:
11495019-11494769
251
EPOR_HUMAN
1-39
39
2
A:7-15
B:8-15
9
8
1.2
ENST00000222139
2
ENSE00001246294
chr19:
11493908-11493773
136
EPOR_HUMAN
39-84
46
2
A:15-60
B:15-60
46
46
1.3
ENST00000222139
3
ENSE00001185968
chr19:
11492781-11492606
176
EPOR_HUMAN
84-143
60
2
A:60-119
B:60-119
60
60
1.4
ENST00000222139
4
ENSE00000680536
chr19:
11492525-11492368
158
EPOR_HUMAN
143-195
53
2
A:119-171
B:119-171
53
53
1.5
ENST00000222139
5
ENSE00000680533
chr19:
11491885-11491732
154
EPOR_HUMAN
196-247
52
2
A:172-223
B:172-223
52
52
1.6
ENST00000222139
6
ENSE00000680531
chr19:
11491647-11491560
88
EPOR_HUMAN
247-276
30
2
A:223-223
B:223-225
1
3
1.7
ENST00000222139
7
ENSE00000680529
chr19:
11489454-11489367
88
EPOR_HUMAN
276-305
30
0
-
-
1.8
ENST00000222139
8
ENSE00001131148
chr19:
11489271-11488475
797
EPOR_HUMAN
306-508
203
0
-
-
2.1
ENST00000252723
1
ENSE00001130431
chr7:
100318423-100318616
194
EPO_HUMAN
1-5
5
0
-
-
2.2
ENST00000252723
2
ENSE00001144077
chr7:
100319181-100319326
146
EPO_HUMAN
5-53
49
1
C:2-26
25
2.3
ENST00000252723
3
ENSE00001130423
chr7:
100319585-100319671
87
EPO_HUMAN
54-82
29
1
C:27-55
29
2.4
ENST00000252723
4
ENSE00001130416
chr7:
100320287-100320466
180
EPO_HUMAN
83-142
60
1
C:56-115
60
2.5
ENST00000252723
5
ENSE00000894545
chr7:
100320601-100321323
723
EPO_HUMAN
143-193
51
1
C:116-162 (gaps)
47
[
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SCOP Domains
(2, 5)
Info
All SCOP Domains
1a: SCOP_d1cn4c_ (C:)
2a: SCOP_d1cn4a1 (A:7-116)
2b: SCOP_d1cn4a2 (A:117-223)
2c: SCOP_d1cn4b1 (B:8-116)
2d: SCOP_d1cn4b2 (B:117-225)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Short-chain cytokines
(78)
Protein domain
:
Erythropoietin
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1cn4c_
C:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Erythropoietin (EPO) receptor
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
2a
d1cn4a1
A:7-116
2b
d1cn4a2
A:117-223
2c
d1cn4b1
B:8-116
2d
d1cn4b2
B:117-225
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CATH Domains
(2, 5)
Info
all CATH domains
1a: CATH_1cn4C00 (C:2-162)
2a: CATH_1cn4A02 (A:119-220)
2b: CATH_1cn4B02 (B:119-220)
2c: CATH_1cn4A01 (A:22-118)
2d: CATH_1cn4B01 (B:22-118)
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1cn4C00
C:2-162
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1cn4A02
A:119-220
2b
1cn4B02
B:119-220
2c
1cn4A01
A:22-118
2d
1cn4B01
B:22-118
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Pfam Domains
(0, 0)
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all PFAM domains
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