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1CM5
Asym. Unit
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Asym.Unit (259 KB)
Biol.Unit 1 (255 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C418A,C419A MUTANT OF PFL FROM E.COLI
Authors
:
A. Becker, K. Fritz-Wolf, W. Kabsch, J. Knappe, S. Schultz, A. F. V. Wagner
Date
:
14 May 99 (Deposition) - 08 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glycyl Radical Enzyme, Transferase, Glucose Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Becker, K. Fritz-Wolf, W. Kabsch, J. Knappe, S. Schultz, A. F. Volker Wagner
Structure And Mechanism Of The Glycyl Radical Enzyme Pyruvate Formate-Lyase.
Nat. Struct. Biol. V. 6 969 1999
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
1b: CARBONATE ION (CO3b)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
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No.
Name
Count
Type
Full Name
1
CO3
2
Ligand/Ion
CARBONATE ION
2
NA
2
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:176 , ALA A:418 , PHE A:432 , ARG A:435 , LEU A:604 , ILE A:606 , HOH A:1065
BINDING SITE FOR RESIDUE CO3 A 760
2
AC2
SOFTWARE
ARG B:176 , ALA B:418 , PHE B:432 , ARG B:435 , LEU B:604
BINDING SITE FOR RESIDUE CO3 B 760
3
AC3
SOFTWARE
ALA A:652 , LEU A:654 , GLU A:700 , GLY A:701
BINDING SITE FOR RESIDUE NA A 1056
4
AC4
SOFTWARE
ALA B:652 , LEU B:654 , GLU B:700 , GLY B:701
BINDING SITE FOR RESIDUE NA B 1057
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PFL (A:2-624,B:2-624)
2: GLY_RADICAL_2 (A:631-759,B:631-759)
3: GLY_RADICAL_1 (A:729-737,B:729-737)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PFL
PS51554
Pyruvate formate-lyase domain profile.
PFLB_ECOLI
3-625
2
A:2-624
B:2-624
2
GLY_RADICAL_2
PS51149
Glycine radical domain profile.
PFLB_ECOLI
632-760
2
A:631-759
B:631-759
3
GLY_RADICAL_1
PS00850
Glycine radical domain signature.
PFLB_ECOLI
730-738
2
A:729-737
B:729-737
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
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1a: SCOP_d1cm5a_ (A:)
1b: SCOP_d1cm5b_ (B:)
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)
Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PFL-like glycyl radical enzymes
(32)
Superfamily
:
PFL-like glycyl radical enzymes
(32)
Family
:
PFL-like
(11)
Protein domain
:
Pyruvate formate-lyase, PFL
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d1cm5a_
A:
1b
d1cm5b_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1cm5A00 (A:1-759)
1b: CATH_1cm5B00 (B:1-759)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
Anaerobic Ribonucleotide-triphosphate Reductase Large Chain
(15)
Homologous Superfamily
:
[code=3.20.70.20, no name defined]
(15)
Escherichia coli. Organism_taxid: 562
(6)
1a
1cm5A00
A:1-759
1b
1cm5B00
B:1-759
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Pfam Domains
(0, 0)
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Asym.Unit (259 KB)
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