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1CJY
Biol. Unit 1
Info
Asym.Unit (206 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
HUMAN CYTOSOLIC PHOSPHOLIPASE A2
Authors
:
A. Dessen, J. Tang, H. Schmidt, M. Stahl, J. D. Clark, J. Seehra, W. S. Somers
Date
:
20 Apr 99 (Deposition) - 20 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Phospholipase, Lipid-Binding, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Dessen, J. Tang, H. Schmidt, M. Stahl, J. D. Clark, J. Seehra, W. S. Somers
Crystal Structure Of Human Cytosolic Phospholipase A2 Reveals A Novel Topology And Catalytic Mechanism.
Cell(Cambridge, Mass. ) V. 97 349 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
2b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:40 , THR A:41 , ASP A:43 , ASN A:65 , MES A:3000 , HOH A:3026
BINDING SITE FOR RESIDUE CA A 950
2
AC2
SOFTWARE
ASP A:40 , ASP A:43 , ASP A:93 , ALA A:94 , ASN A:95
BINDING SITE FOR RESIDUE CA A 951
3
AC5
SOFTWARE
ASP A:40 , ASP A:43 , ASN A:64 , ASN A:65 , ALA A:94 , TYR A:96 , CA A:950 , HOH A:3026 , LYS B:1281
BINDING SITE FOR RESIDUE MES A 3000
4
AC6
SOFTWARE
LYS A:281 , HOH B:53 , ASP B:1040 , ASP B:1043 , HIS B:1062 , ASN B:1064 , ASN B:1065 , ALA B:1094 , ASN B:1095 , TYR B:1096 , CA B:1950
BINDING SITE FOR RESIDUE MES B 4000
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_018424 (K651K, chain A, )
2: VAR_029276 (G1103R, chain A/A, )
3: VAR_070778 (S1111P, chain A/A, )
4: VAR_018760 (V1224I, chain A/A, )
5: VAR_070779 (R1485H, chain A/A, )
6: VAR_062128 (I1637V, chain A/A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018424
R
651
K
PA24A_HUMAN
Polymorphism
2307198
A
K
651
K
2
UniProt
VAR_029276
G
103
R
PA24A_HUMAN
Polymorphism
28395828
A
A
G
103
1103
R
3
UniProt
VAR_070778
S
111
P
PA24A_HUMAN
Disease
121434634
A
A
S
111
1111
P
4
UniProt
VAR_018760
V
224
I
PA24A_HUMAN
Polymorphism
12720588
A
A
V
224
1224
I
5
UniProt
VAR_070779
R
485
H
PA24A_HUMAN
Disease
121434635
A
A
R
485
1485
H
6
UniProt
VAR_062128
I
637
V
PA24A_HUMAN
Polymorphism
28395831
A
A
I
637
1637
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PLA2C (A:140-721)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLA2C
PS51210
PLA2c domain profile.
PA24A_HUMAN
140-740
1
A:140-721
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1cjya1 (A:13-141)
1b: SCOP_d1cjyb1 (B:1015-1141)
2a: SCOP_d1cjya2 (A:142-721)
2b: SCOP_d1cjyb2 (B:1142-1717)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
C2 domain (Calcium/lipid-binding domain, CaLB)
(148)
Family
:
PLC-like (P variant)
(81)
Protein domain
:
Domain from cytosolic phospholipase A2
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1cjya1
A:13-141
1b
d1cjyb1
B:1015-1141
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FabD/lysophospholipase-like
(4)
Superfamily
:
FabD/lysophospholipase-like
(4)
Family
:
Lysophospholipase
(1)
Protein domain
:
Cytosolic phospholipase A2 catalytic domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1cjya2
A:142-721
2b
d1cjyb2
B:1142-1717
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1cjyB02 (B:1139-1712)
1b: CATH_1cjyA02 (A:139-718)
2a: CATH_1cjyA01 (A:13-138)
2b: CATH_1cjyB01 (B:1015-1138)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Cytosolic phospholipase A2 catalytic domain
(2)
Homologous Superfamily
:
Cytosolic phospholipase A2 catalytic domain
(2)
Human (Homo sapiens)
(1)
1a
1cjyB02
B:1139-1712
1b
1cjyA02
A:139-718
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
C2- domain Calcium/lipid binding domain
(78)
Human (Homo sapiens)
(41)
2a
1cjyA01
A:13-138
2b
1cjyB01
B:1015-1138
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (206 KB)
Header - Asym.Unit
Biol.Unit 1 (103 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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