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1CJX
Asym. Unit
Info
Asym.Unit (245 KB)
Biol.Unit 1 (239 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSEUDOMONAS FLUORESCENS HPPD
Authors
:
L. Serre, A. Sailland, D. Sy, P. Boudec, A. Rolland, E. Pebay-Peroulla, C. Cohen-Addad
Date
:
20 Apr 99 (Deposition) - 26 Apr 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Dioxygenase, Iron
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Serre, A. Sailland, D. Sy, P. Boudec, A. Rolland, E. Pebay-Peyroula, C. Cohen-Addad
Crystal Structure Of Pseudomonas Fluorescens 4-Hydroxyphenylpyruvate Dioxygenase: An Enzyme Involved In The Tyrosine Degradation Pathway.
Structure Fold. Des. V. 7 977 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: ETHYL MERCURY ION (EMCa)
2b: ETHYL MERCURY ION (EMCb)
2c: ETHYL MERCURY ION (EMCc)
2d: ETHYL MERCURY ION (EMCd)
3a: FE (II) ION (FE2a)
3b: FE (II) ION (FE2b)
3c: FE (II) ION (FE2c)
3d: FE (II) ION (FE2d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
EMC
4
Ligand/Ion
ETHYL MERCURY ION
3
FE2
4
Ligand/Ion
FE (II) ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ASA (AUTHOR)
11: ASB (AUTHOR)
12: ASC (AUTHOR)
13: ASD (AUTHOR)
14: BC1 (SOFTWARE)
15: BC2 (SOFTWARE)
16: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:161 , HIS A:240 , GLU A:322 , ACT A:631
BINDING SITE FOR RESIDUE FE2 A 629
02
AC2
SOFTWARE
HIS B:161 , HIS B:240 , GLU B:322 , ACT B:631
BINDING SITE FOR RESIDUE FE2 B 629
03
AC3
SOFTWARE
HIS C:161 , HIS C:240 , GLU C:322 , ACT C:631
BINDING SITE FOR RESIDUE FE2 C 629
04
AC4
SOFTWARE
HIS D:161 , HIS D:240 , GLU D:322 , ACT D:631
BINDING SITE FOR RESIDUE FE2 D 629
05
AC5
SOFTWARE
GLU A:17 , ALA A:66 , CYS A:78 , PRO A:123 , TYR A:125
BINDING SITE FOR RESIDUE EMC A 630
06
AC6
SOFTWARE
GLU B:17 , ALA B:66 , CYS B:78 , TYR B:125
BINDING SITE FOR RESIDUE EMC B 630
07
AC7
SOFTWARE
GLU C:17 , ALA C:66 , CYS C:78 , TYR C:125
BINDING SITE FOR RESIDUE EMC C 630
08
AC8
SOFTWARE
GLU D:17 , ASN D:59 , ALA D:66 , CYS D:78 , TYR D:125
BINDING SITE FOR RESIDUE EMC D 630
09
AC9
SOFTWARE
HIS A:161 , HIS A:240 , GLN A:309 , GLU A:322 , PHE A:337 , FE2 A:629
BINDING SITE FOR RESIDUE ACT A 631
10
ASA
AUTHOR
HIS A:161 , HIS A:240 , GLU A:322
IRON-BINDING SITE
11
ASB
AUTHOR
HIS B:161 , HIS B:240 , GLU B:322
IRON-BINDING SITE
12
ASC
AUTHOR
HIS C:161 , HIS C:240 , GLU C:322
IRON-BINDING SITE
13
ASD
AUTHOR
HIS D:161 , HIS D:240 , GLU D:322
IRON-BINDING SITE
14
BC1
SOFTWARE
HIS B:161 , HIS B:240 , GLN B:309 , GLU B:322 , PHE B:337 , FE2 B:629 , HOH B:652
BINDING SITE FOR RESIDUE ACT B 631
15
BC2
SOFTWARE
HIS C:161 , HIS C:240 , GLN C:309 , GLU C:322 , PHE C:337 , FE2 C:629 , HOH C:656
BINDING SITE FOR RESIDUE ACT C 631
16
BC3
SOFTWARE
HIS D:161 , HIS D:240 , GLN D:309 , GLU D:322 , PHE D:337 , FE2 D:629 , HOH D:657
BINDING SITE FOR RESIDUE ACT D 631
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: VOC (A:12-129,B:12-129,C:12-129,D:12-12...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VOC
PS51819
Vicinal oxygen chelate (VOC) domain profile.
HPPD_PSEUJ
12-129
158-313
8
A:12-129
B:12-129
C:12-129
D:12-129
A:159-313
B:159-313
C:159-313
D:159-313
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1cjxa1 (A:4-153)
1b: SCOP_d1cjxa2 (A:154-356)
1c: SCOP_d1cjxb1 (B:4-153)
1d: SCOP_d1cjxb2 (B:154-356)
1e: SCOP_d1cjxc1 (C:4-153)
1f: SCOP_d1cjxc2 (C:154-356)
1g: SCOP_d1cjxd1 (D:4-153)
1h: SCOP_d1cjxd2 (D:154-356)
View:
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Extradiol dioxygenases
(43)
Protein domain
:
4-hydroxyphenylpyruvate dioxygenase, HppD
(9)
Pseudomonas fluorescens [TaxId: 294]
(1)
1a
d1cjxa1
A:4-153
1b
d1cjxa2
A:154-356
1c
d1cjxb1
B:4-153
1d
d1cjxb2
B:154-356
1e
d1cjxc1
C:4-153
1f
d1cjxc2
C:154-356
1g
d1cjxd1
D:4-153
1h
d1cjxd2
D:154-356
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1cjxA01 (A:4-153)
1b: CATH_1cjxB01 (B:4-153)
1c: CATH_1cjxC01 (C:4-153)
1d: CATH_1cjxD01 (D:4-153)
1e: CATH_1cjxB02 (B:154-355)
1f: CATH_1cjxC02 (C:154-355)
1g: CATH_1cjxD02 (D:154-355)
1h: CATH_1cjxA02 (A:154-356)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Pseudomonas fluorescens. Organism_taxid: 294. Cell_line: a32.
(1)
1a
1cjxA01
A:4-153
1b
1cjxB01
B:4-153
1c
1cjxC01
C:4-153
1d
1cjxD01
D:4-153
1e
1cjxB02
B:154-355
1f
1cjxC02
C:154-355
1g
1cjxD02
D:154-355
1h
1cjxA02
A:154-356
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (245 KB)
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