PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1CJ1
Asym. Unit
Info
Asym.Unit (196 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (34 KB)
Biol.Unit 3 (35 KB)
Biol.Unit 4 (35 KB)
Biol.Unit 5 (35 KB)
Biol.Unit 6 (35 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
GROWTH FACTOR RECEPTOR BINDING PROTEIN SH2 DOMAIN (HUMAN) COMPLEXED WITH A PHOSPHOTYROSYL DERIVATIVE
Authors
:
J. Rahuel
Date
:
21 Apr 99 (Deposition) - 22 Dec 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Keywords
:
Signal Transduction, Sh2 Domain, Phosphotyrosine, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Furet, C. Garcia-Echeverria, B. Gay, J. Schoepfer, M. Zeller, J. Rahuel
Structure-Based Design, Synthesis, And X-Ray Crystallography Of A High-Affinity Antagonist Of The Grb2-Sh2 Domain Containing An Asparagine Mimetic.
J. Med. Chem. V. 42 2358 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 12)
Info
All Hetero Components
1a: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78a)
1b: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78b)
1c: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78c)
1d: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78d)
1e: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78e)
1f: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78f)
1g: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78g)
1h: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78h)
1i: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78i)
1j: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78j)
1k: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78k)
1l: [1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYL... (C78l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
C78
12
Ligand/Ion
[1-[1-(6-CARBAMOYL-CYCLOHEX-2-ENYLCARBAMOYL)-CYCLOHEXYLCARBAMOYL]-2-(4-PHOSPHONOOXY-PHENYL)-ETHYL]-CARBAMIC ACID 3-AMINOBENZYLESTER
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:3 , ARG A:67 , ARG A:86 , SER A:88 , SER A:90 , SER A:96 , GLN A:106 , HIS A:107 , PHE A:108 , LYS A:109 , LEU A:111 , LEU A:120 , TRP A:121 , C78 F:160
BINDING SITE FOR RESIDUE C78 A 155
02
AC2
SOFTWARE
ARG B:67 , ARG B:86 , SER B:88 , SER B:90 , SER B:96 , GLN B:106 , HIS B:107 , PHE B:108 , LYS B:109 , LEU B:111 , LEU B:120 , TRP B:121 , C78 D:158
BINDING SITE FOR RESIDUE C78 B 156
03
AC3
SOFTWARE
ARG C:67 , ARG C:86 , SER C:88 , SER C:90 , SER C:96 , GLN C:106 , HIS C:107 , PHE C:108 , LYS C:109 , LEU C:111 , LEU C:120 , TRP C:121 , C78 E:159
BINDING SITE FOR RESIDUE C78 C 157
04
AC4
SOFTWARE
LEU B:111 , C78 B:156 , ARG D:67 , ARG D:86 , SER D:88 , SER D:90 , SER D:96 , GLN D:106 , HIS D:107 , PHE D:108 , LYS D:109 , LEU D:111 , LEU D:120 , TRP D:121
BINDING SITE FOR RESIDUE C78 D 158
05
AC5
SOFTWARE
C78 C:157 , ARG E:67 , ARG E:86 , SER E:88 , SER E:90 , SER E:96 , GLN E:106 , HIS E:107 , PHE E:108 , LYS E:109 , LEU E:111 , LEU E:120 , TRP E:121
BINDING SITE FOR RESIDUE C78 E 159
06
AC6
SOFTWARE
C78 A:155 , ARG F:67 , ARG F:86 , SER F:88 , SER F:90 , SER F:96 , GLN F:106 , HIS F:107 , PHE F:108 , LYS F:109 , LEU F:111 , LEU F:120 , TRP F:121
BINDING SITE FOR RESIDUE C78 F 160
07
AC7
SOFTWARE
ARG G:67 , ARG G:86 , SER G:88 , SER G:90 , SER G:96 , GLN G:106 , HIS G:107 , PHE G:108 , LYS G:109 , LEU G:111 , LEU G:120 , TRP G:121 , C78 K:165
BINDING SITE FOR RESIDUE C78 G 161
08
AC8
SOFTWARE
ARG H:67 , ARG H:86 , SER H:88 , SER H:90 , SER H:96 , GLN H:106 , HIS H:107 , PHE H:108 , LYS H:109 , LEU H:111 , LEU H:120 , TRP H:121 , C78 J:164
BINDING SITE FOR RESIDUE C78 H 162
09
AC9
SOFTWARE
ARG I:67 , ARG I:86 , SER I:88 , SER I:90 , SER I:96 , GLN I:106 , HIS I:107 , PHE I:108 , LYS I:109 , LEU I:111 , LEU I:120 , TRP I:121 , C78 L:166
BINDING SITE FOR RESIDUE C78 I 163
10
BC1
SOFTWARE
LEU H:111 , C78 H:162 , ARG J:67 , ARG J:86 , SER J:88 , SER J:90 , SER J:96 , GLN J:106 , HIS J:107 , PHE J:108 , LYS J:109 , LEU J:111 , LEU J:120 , TRP J:121
BINDING SITE FOR RESIDUE C78 J 164
11
BC2
SOFTWARE
C78 G:161 , ARG K:67 , ARG K:86 , SER K:88 , SER K:90 , SER K:96 , GLN K:106 , HIS K:107 , PHE K:108 , LYS K:109 , LEU K:111 , LEU K:120 , TRP K:121
BINDING SITE FOR RESIDUE C78 K 165
12
BC3
SOFTWARE
C78 I:163 , ARG L:67 , ARG L:86 , SER L:88 , SER L:90 , SER L:96 , GLN L:106 , HIS L:107 , PHE L:108 , LYS L:109 , LEU L:111 , LEU L:120 , TRP L:121
BINDING SITE FOR RESIDUE C78 L 166
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:60-152,B:60-152,C:60-152,D:60-15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
GRB2_HUMAN
60-152
12
A:60-152
B:60-152
C:60-152
D:60-152
E:60-152
F:60-152
G:60-152
H:60-152
I:60-152
J:60-152
K:60-152
L:60-152
[
close PROSITE info
]
Exons
(3, 36)
Info
All Exons
Exon 1.4 (A:57-59 | B:57-59 | C:57-59 | D:57...)
Exon 1.6 (A:59-100 | B:59-100 | C:59-100 | D...)
Exon 1.7 (A:100-152 | B:100-152 | C:100-152 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000392564
3a
ENSE00001512384
chr17:
73389945-73389632
314
GRB2_HUMAN
1-26
26
0
-
-
1.4
ENST00000392564
4
ENSE00000387085
chr17:
73328878-73328781
98
GRB2_HUMAN
27-59
33
12
A:57-59
B:57-59
C:57-59
D:57-59
E:57-59
F:57-59
G:57-59
H:57-59
I:57-59
J:57-59
K:57-59
L:57-59
3
3
3
3
3
3
3
3
3
3
3
3
1.6
ENST00000392564
6
ENSE00000855724
chr17:
73322101-73321979
123
GRB2_HUMAN
59-100
42
12
A:59-100
B:59-100
C:59-100
D:59-100
E:59-100
F:59-100
G:59-100
H:59-100
I:59-100
J:59-100
K:59-100
L:59-100
42
42
42
42
42
42
42
42
42
42
42
42
1.7
ENST00000392564
7
ENSE00000744359
chr17:
73317908-73317740
169
GRB2_HUMAN
100-156
57
12
A:100-152
B:100-152
C:100-152
D:100-152
E:100-152
F:100-152
G:100-152
H:100-152
I:100-152
J:100-152
K:100-152
L:100-152
53
53
53
53
53
53
53
53
53
53
53
53
1.8b
ENST00000392564
8b
ENSE00001512383
chr17:
73316634-73314157
2478
GRB2_HUMAN
157-217
61
0
-
-
[
close EXON info
]
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1cj1a_ (A:)
1b: SCOP_d1cj1b_ (B:)
1c: SCOP_d1cj1c_ (C:)
1d: SCOP_d1cj1d_ (D:)
1e: SCOP_d1cj1e_ (E:)
1f: SCOP_d1cj1f_ (F:)
1g: SCOP_d1cj1g_ (G:)
1h: SCOP_d1cj1h_ (H:)
1i: SCOP_d1cj1i_ (I:)
1j: SCOP_d1cj1j_ (J:)
1k: SCOP_d1cj1k_ (K:)
1l: SCOP_d1cj1l_ (L:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Growth factor receptor-bound protein 2 (GRB2)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d1cj1a_
A:
1b
d1cj1b_
B:
1c
d1cj1c_
C:
1d
d1cj1d_
D:
1e
d1cj1e_
E:
1f
d1cj1f_
F:
1g
d1cj1g_
G:
1h
d1cj1h_
H:
1i
d1cj1i_
I:
1j
d1cj1j_
J:
1k
d1cj1k_
K:
1l
d1cj1l_
L:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1cj1A00 (A:57-152)
1b: CATH_1cj1B00 (B:57-152)
1c: CATH_1cj1C00 (C:57-152)
1d: CATH_1cj1D00 (D:57-152)
1e: CATH_1cj1E00 (E:57-152)
1f: CATH_1cj1F00 (F:57-152)
1g: CATH_1cj1G00 (G:57-152)
1h: CATH_1cj1H00 (H:57-152)
1i: CATH_1cj1I00 (I:57-152)
1j: CATH_1cj1J00 (J:57-152)
1k: CATH_1cj1K00 (K:57-152)
1l: CATH_1cj1L00 (L:57-152)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1cj1A00
A:57-152
1b
1cj1B00
B:57-152
1c
1cj1C00
C:57-152
1d
1cj1D00
D:57-152
1e
1cj1E00
E:57-152
1f
1cj1F00
F:57-152
1g
1cj1G00
G:57-152
1h
1cj1H00
H:57-152
1i
1cj1I00
I:57-152
1j
1cj1J00
J:57-152
1k
1cj1K00
K:57-152
1l
1cj1L00
L:57-152
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (196 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (34 KB)
Header - Biol.Unit 2
Biol.Unit 3 (35 KB)
Header - Biol.Unit 3
Biol.Unit 4 (35 KB)
Header - Biol.Unit 4
Biol.Unit 5 (35 KB)
Header - Biol.Unit 5
Biol.Unit 6 (35 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1CJ1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help