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1CIT
Asym. Unit
Info
Asym.Unit (33 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B
Authors
:
G. Meinke, P. B. Sigler
Date
:
05 Apr 99 (Deposition) - 03 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Orphan Nuclear Receptor, Early Immediate Response Gene Product, Transcription Factor, Monomeric Protein-Dna Complex, Minor Groove Interactions, Protein/Dna, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Meinke, P. B. Sigler
Dna-Binding Mechanism Of The Monomeric Orphan Nuclear Receptor Ngfi-B.
Nat. Struct. Biol. V. 6 471 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: ZNA (AUTHOR)
4: ZNB (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:232 , CYS A:235 , CYS A:249 , CYS A:252
BINDING SITE FOR RESIDUE ZN A 398
2
AC2
SOFTWARE
CYS A:268 , CYS A:274 , CYS A:284 , CYS A:287
BINDING SITE FOR RESIDUE ZN A 399
3
ZNA
AUTHOR
ZN A:398 , CYS A:232 , CYS A:235 , CYS A:249 , CYS A:252
ZINC COORDINATED BY 4 CYSTEINES
4
ZNB
AUTHOR
ZN A:399 , CYS A:268 , CYS A:274 , CYS A:284 , CYS A:287
ZINC COORDINATED BY 4 CYSTEINES
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: NUCLEAR_REC_DBD_1 (A:232-258)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUCLEAR_REC_DBD_1
PS00031
Nuclear hormones receptors DNA-binding region signature.
NR4A1_RAT
266-292
1
A:232-258
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:230-257)
Exon 1.3 (A:258-301)
Exon 1.4 (A:301-318)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000010171
1
ENSRNOE00000070711
chr7:
140012807-140012914
108
NR4A1_RAT
-
0
0
-
-
1.2
ENSRNOT00000010171
2
ENSRNOE00000070817
chr7:
140015853-140016727
875
NR4A1_RAT
1-291
291
1
A:230-257
28
1.3
ENSRNOT00000010171
3
ENSRNOE00000071068
chr7:
140017539-140017668
130
NR4A1_RAT
292-335
44
1
A:258-301
44
1.4
ENSRNOT00000010171
4
ENSRNOE00000071313
chr7:
140017970-140018121
152
NR4A1_RAT
335-385
51
1
A:301-318
18
1.5
ENSRNOT00000010171
5
ENSRNOE00000071534
chr7:
140018491-140018693
203
NR4A1_RAT
386-453
68
0
-
-
1.6
ENSRNOT00000010171
6
ENSRNOE00000071749
chr7:
140018783-140018961
179
NR4A1_RAT
453-513
61
0
-
-
1.7
ENSRNOT00000010171
7
ENSRNOE00000071997
chr7:
140019754-140020587
834
NR4A1_RAT
513-597
85
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1cita_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
Nuclear receptor
(49)
Protein domain
:
Orphan nuclear receptor NGFI-B DNA-binding domain
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1cita_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1citA00 (A:230-318)
View:
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Classes
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Topologies
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)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Erythroid Transcription Factor GATA-1; Chain A
(61)
Homologous Superfamily
:
Erythroid Transcription Factor GATA-1, subunit A
(61)
[unclassified]
(30)
1a
1citA00
A:230-318
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Asymmetric Unit 1
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